Browse Element(s) Details


OsAffx.20682.1.S1_at

Description tigr:9638.m00843
TID=OsAffx.20682.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0970011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative
LOC_Os10g09700OsAffx.20682.1.S1_at11/1110+5008228..5011320Protein kinase domain containing protein
LOC_Os10g09710OsAffx.20681.1.S1_at1/1110+5013505..5013986hypothetical protein
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20682.1.S1_at--1129--2571Chr10:5010746..5010770 (25 bp)
AACGTTTGAATATTGCAGCAGGAGC
LOC_Os10g09700
OsAffx.20682.1.S1_at--604--2371Chr10:5010800..5010824 (25 bp)
AAACCTCTACAACTATTTTGCATGG
LOC_Os10g09700
OsAffx.20682.1.S1_at--305--591Chr10:5010956..5010980 (25 bp)
ATCCAATATATCTTCAATCGGGCTT
LOC_Os10g09700
OsAffx.20682.1.S1_at--758--4111Chr10:5010986..5011010 (25 bp)
CGAAGCAGAGCGATGTATACAGTTT
LOC_Os10g09700
OsAffx.20682.1.S1_at--1051--6111Chr10:5011013..5011037 (25 bp)
GAGTGGTGCTCTTAGAACTTCTTAC
LOC_Os10g09700
OsAffx.20682.1.S1_at--594--6471Chr10:5011063..5011087 (25 bp)
GATACTAGACTGGTTACGACGTTTC
LOC_Os10g09700
OsAffx.20682.1.S1_at--137--7891Chr10:5011074..5011098 (25 bp)
GGTTACGACGTTTCTAGATGCATAT
LOC_Os10g09700
OsAffx.20682.1.S1_at--284--1091Chr10:5011112..5011136 (25 bp)
AGGGCGCTATCGATCTTTTTGACAG
LOC_Os10g09700
OsAffx.20682.1.S1_at--1033--8011Chr10:5011149..5011173 (25 bp)
GGAGGGCGACACAGAAGTATTCAAC
LOC_Os10g09700
OsAffx.20682.1.S1_at--286--3271Chr10:5011170..5011194 (25 bp)
CAACAATCTTGCCATCCTAGTAGTG
LOC_Os10g09700
OsAffx.20682.1.S1_at--170--4291Chr10:5011185..5011209 (25 bp)
CCTAGTAGTGGATTGTCTGAAGTTC
LOC_Os10g09700
Target Sequence 
AACGTTTGAATATTGCAGCAGGAGCAGCAGAAGGATTAGCTTATATGCATTCAAAAACCTCTACAACTATTTTGCATGGT
GATATCAAACCTGGCAATATACTTTTGGACGAAAACTTTGATCCCAAAATATCTGACTTTGGAATATCAAGATTGATTGC
TATAGATAAAACCCATACTAAATGTGTGATTGGAGATATGTGTTATATGGATCCAATATATCTTCAATCGGGCTTGTTGA
CGAAGCAGAGCGATGTATACAGTTTTGGAGTGGTGCTCTTAGAACTTCTTACGAGACAAAAGGCAAGTTCTGGTGAAGAT
ACTAGACTGGTTACGACGTTTCTAGATGCATATACAGAAGATCATAAGGGCGCTATCGATCTTTTTGACAGAGAAATTTT
ATTGGAGGGCGACACAGAAGTATTCAACAATCTTGCCATCCTAGTAGTGGATTGTCTGAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis