Browse Element(s) Details


OsAffx.6623.1.S1_at

Description tigr:9638.m00847
TID=OsAffx.6623.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0974011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09700OsAffx.20682.1.S1_at11/1110+5008228..5011320Protein kinase domain containing protein
LOC_Os10g09710OsAffx.20681.1.S1_at1/1110+5013505..5013986hypothetical protein
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6623.1.S1_at--516--7191Chr10:5036754..5036778 (25 bp)
GTCGGGACACCATGGATCCGCAAGA
LOC_Os10g09740
OsAffx.6623.1.S1_at--191--1731Chr10:5036746..5036770 (25 bp)
ACCATGGATCCGCAAGACGGCAGGA
LOC_Os10g09740
OsAffx.6623.1.S1_at--611--8311Chr10:5036674..5036698 (25 bp)
GGCTGACAATGCTGCTTGGGAACCT
LOC_Os10g09740
OsAffx.6623.1.S1_at--1156--4751Chr10:5036664..5036688 (25 bp)
GCTGCTTGGGAACCTGATCGACATC
LOC_Os10g09740
OsAffx.6623.1.S1_at--479--4051Chr10:5036635..5036659 (25 bp)
CGATCGAGGCAAGATCACAGGCGAA
LOC_Os10g09740
OsAffx.6623.1.S1_at--53--7311Chr10:5036520..5036544 (25 bp)
GTGCTCCTGCATTGCTTCATTTTTG
LOC_Os10g09740
OsAffx.6623.1.S1_at--273--9691Chr10:5036489..5036513 (25 bp)
TCACAAGACGATCCTCCATTCCGTG
LOC_Os10g09740
OsAffx.6623.1.S1_at--707--9211Chr10:5035315..5035339 (25 bp)
TCCAACTTGGTCACTGAGCTTGCGT
LOC_Os10g09740
OsAffx.6623.1.S1_at--484--8911Chr10:5035301..5035325 (25 bp)
TGAGCTTGCGTCCTTCCTAATGCCG
LOC_Os10g09740
OsAffx.6623.1.S1_at--971--4291Chr10:5035286..5035310 (25 bp)
CCTAATGCCGTCCAACAGGAAGAGG
LOC_Os10g09740
OsAffx.6623.1.S1_at--500--2791Chr10:5035255..5035279 (25 bp)
AAGAGGAGCAGTTCCTGCAACCACC
LOC_Os10g09740
Target Sequence 
GTCGGGACACCATGGATCCGCAAGACGGCAGGAGGAGGTTGATGCGGCGGCGGCGGCGGTTCTGGGCGTGGACAAGGCGG
GGCTGACAATGCTGCTTGGGAACCTGATCGACATCCCGGCGATCGAGGCAAGATCACAGGCGAAGGGGATGTTCCCACCC
GGCCAAACGCGCTCGCGCTCTGCCTCGCGTACTTGCTGCTCTCGCCGGCGCACCCCTCTCTGCCCATGGCTGCCGTGCTC
CTGCATTGCTTCATTTTTGCCGGGGTCACAAGACGATCCTCCATTCCGTGGCCTTCACGTCGGGGGATATACAGCAAAGA
TCATTTCTCCACCAGTGATCTGGAAGAAGCTCTCCAACTTGGTCACTGAGCTTGCGTCCTTCCTAATGCCGTCCAACAGG
AAGAGGAGAAGGAAGAGGAGCAGTTCCTGCAACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis