Browse Element(s) Details


OsAffx.18195.1.S1_at

Description tigr:9638.m00849
TID=OsAffx.18195.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0976011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18195.1.S1_at--144--4831Chr10:5044245..5044269 (25 bp)
GCTAGCTCGTAGCTCGCAATGCGAA
LOC_Os10g09760
OsAffx.18195.1.S1_at--203--6971Chr10:5044253..5044277 (25 bp)
GTAGCTCGCAATGCGAAGCAACAGC
LOC_Os10g09760
OsAffx.18195.1.S1_at--276--5151Chr10:5044270..5044294 (25 bp)
GCAACAGCATGAAGGCGGCGACCAC
LOC_Os10g09760
OsAffx.18195.1.S1_at--287--4531Chr10:5044513..5044537 (25 bp)
GCCGCGACGACTCGATCAGGAACGA
LOC_Os10g09760
OsAffx.18195.1.S1_at--80--2011Chr10:5044522..5044546 (25 bp)
ACTCGATCAGGAACGAGGCCGTCGA
LOC_Os10g09760
OsAffx.18195.1.S1_at--136--5731Chr10:5044548..5044572 (25 bp)
GACTGCATCGAGTTCCTGAAGCGGT
LOC_Os10g09760
OsAffx.18195.1.S1_at--995--9371Chr10:5044555..5044579 (25 bp)
TCGAGTTCCTGAAGCGGTCGTCGGC
LOC_Os10g09760
OsAffx.18195.1.S1_at--748--4591Chr10:5044593..5044617 (25 bp)
GCGAAGCTGTCGAGCGTGACCGCCG
LOC_Os10g09760
OsAffx.18195.1.S1_at--499--4031Chr10:5044631..5044655 (25 bp)
CGTAGCGCGCGATCTGGCCATGGCC
LOC_Os10g09760
OsAffx.18195.1.S1_at--733--4191Chr10:5044724..5044748 (25 bp)
CCCGGTGAAGCAGCCTACCATATTG
LOC_Os10g09760
OsAffx.18195.1.S1_at--1038--1671Chr10:5044735..5044759 (25 bp)
AGCCTACCATATTGGCGAGCACCTC
LOC_Os10g09760
Target Sequence 
GCTAGCTCGTAGCTCGCAATGCGAAGCAACAGCATGAAGGCGGCGACCACGGCGTGCATGCCGCGGCTGGTGCGCGGCGG
CTGCCGCGCGTCGACGGCGAGGCCGGCGGCGTCGGTGTCGCTGCTGGAGCGCATCCGCGACGTCGTGCTCCGCCTCATCA
TGCTCTCCGCCGTGTCCAAGGCGTCGGTCAAGCGCACCGGCGGCGGCAAGGCGTCGTCGTCCTCCTCGCCGCGCGCCGCG
CCGCCGCCGCCGGTGATGACGTCGTGCCGCCGCGACGACTCGATCAGGAACGAGGCCGTCGAGGACTGCATCGAGTTCCT
GAAGCGGTCGTCGGCCGAGGGCGACGCGGCGAAGCTGTCGAGCGTGACCGCCGCCGAGACGGTGGCCGTAGCGCGCGATC
TGGCCATGGCCACCACCAAGCCGTCGTCGCCGTCGTGCGCGATCACCACCGACGACGCGGTGACCGCGCACGGCGCCGCC
CCGGTGAAGCAGCCTACCATATTGGCGAGCACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis