Browse Element(s) Details


OsAffx.361.1.S1_at

Description gb:NM_195144.1
DB_XREF= gi:37531647
TID=OsAffx.361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0051J07.16), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0981011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.361.1.S1_at--779--7091Chr10:5074574..5074598 (25 bp)
GTCACAGTTTAGCTGGTGCTCTACA
LOC_Os10g09810
OsAffx.361.1.S1_at--1115--4771Chr10:5074591..5074615 (25 bp)
GCTCTACATTATTTGACCTTCACTC
LOC_Os10g09810
OsAffx.361.1.S1_at--260--1531Chr10:5074640..5074664 (25 bp)
AGCAGGTTTGTCTCCACATGCATGA
LOC_Os10g09810
OsAffx.361.1.S1_at--1025--10391Chr10:5074920..5074944 (25 bp)
TTATTACATGAGCTTACACCGCCCT
LOC_Os10g09810
OsAffx.361.1.S1_at--673--8291Chr10:5074949..5074973 (25 bp)
GGCTACCTTGGTTTATTGCGACAAT
LOC_Os10g09810
OsAffx.361.1.S1_at--204--10151Chr10:5074986..5075010 (25 bp)
TATCTCTCTACTAATCCTGTTCAGC
LOC_Os10g09810
OsAffx.361.1.S1_at--442--171Chr10:5075044..5075068 (25 bp)
ATTTTGTTCATGATCGCGTTGCTGC
LOC_Os10g09810
OsAffx.361.1.S1_at--524--9471Chr10:5075073..5075097 (25 bp)
TCTGTTCGAGTGCTTCATGTTCCAA
LOC_Os10g09810
OsAffx.361.1.S1_at--814--5672Chr10:5075099..5075123 (25 bp)
GACATCACAGTACGCGGACATCTTC
LOC_Os10g09810
OsAffx.361.1.S1_at--374--2892Chr10:5075127..5075151 (25 bp)
AAGGGTTTGCCTACATCCATTTTTG
LOC_Os10g09810
OsAffx.361.1.S1_at--293--8672Chr10:5075150..5075174 (25 bp)
TGTGGAGTTTCGTTCCAGTCTCAAC
LOC_Os10g09810
Target Sequence 
GTCACAGTTTAGCTGGTGCTCTACATTATTTGACCTTCACTCGGCCTGATATTTCCTATGCTGTTCAGCAGGTTTGTCTC
CACATGCATGACCCAGGGATTCCCATCGTGCCGCTCTCAAGCGGATACTCCGATTGGGCGGGTTGTCCTGACACTCGCAA
GTCCACCTGGTCATTCAAGCGGCAGAACACGGTGTCTCGATCCAGCGACGAAGCAGAGTACAGGGTTGTGGCCAATACAG
TTGCTGAAACTTGTTGGCTATGCCAATTATTACATGAGCTTACACCGCCCTCCCGGGCTACCTTGGTTTATTGCGACAAT
GTCAGCGCCATCTATCTCTCTACTAATCCTGTTCAGCATCAACGGACCAAACATGTGGAGATTGATTTACATTTTGTTCA
TGATCGCGTTGCTGCTGGTTCTGTTCGAGTGCTTCATGTTCCAACGACATCACAGTACGCGGACATCTTCACCAAGGGTT
TGCCTACATCCATTTTTGTGGAGTTTCGTTCCAGTCTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis