Browse Element(s) Details


OsAffx.30362.1.S1_at

Description tigr:9638.m00855
TID=OsAffx.30362.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative OsNAC4 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0982011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30362.1.S1_at--1070--10491Chr10:5081536..5081560 (25 bp)
TTAATGCATTTGACGAGGCTCTCGA
LOC_Os10g09820
OsAffx.30362.1.S1_at--117--5831Chr10:5081513..5081537 (25 bp)
GACCAATGCCATGACACCAATTTCG
LOC_Os10g09820
OsAffx.30362.1.S1_at--118--371Chr10:5081482..5081506 (25 bp)
ATAATGCTGGTATCTATCCTGGAAA
LOC_Os10g09820
OsAffx.30362.1.S1_at--1160--3051Chr10:5081404..5081428 (25 bp)
AATCTACTCTTGGTGCATTAACTGG
LOC_Os10g09820
OsAffx.30362.1.S1_at--468--851Chr10:5081368..5081392 (25 bp)
ATGGCACGGGCTACCAGTTCCATGA
LOC_Os10g09820
OsAffx.30362.1.S1_at--148--712Chr10:5081317..5081341 (25 bp)
ATGATGCATCTGCTCAATCCATGGG
LOC_Os10g09820
OsAffx.30362.1.S1_at--805--3031Chr10:5081302..5081326 (25 bp)
AATCCATGGGAATTCAACCTGCTGC
LOC_Os10g09820
OsAffx.30362.1.S1_at--228--1771Chr10:5081286..5081310 (25 bp)
ACCTGCTGCTGGACATTCCATGGGA
LOC_Os10g09820
OsAffx.30362.1.S1_at--1127--2991Chr10:5081240..5081264 (25 bp)
AATGATGATTTGTCGTCACTCCTTG
LOC_Os10g09820
OsAffx.30362.1.S1_at--963--7091Chr10:5081226..5081250 (25 bp)
GTCACTCCTTGCTGATATTTCGAGA
LOC_Os10g09820
OsAffx.30362.1.S1_at--397--1171Chr10:5081150..5081174 (25 bp)
AGTAATCAGGGCTTGCACATCTGCA
LOC_Os10g09820
Target Sequence 
TTAATGCATTTGACGAGGCTCTCGACCAATGCCATGACACCAATTTCGCATGGGATAATGCTGGTATCTATCCTGGAAAT
AACTTGCTAGATGGCAACTTGGATGATGATACTCAGGATCAGTTTGGCAATCAATCTACTCTTGGTGCATTAACTGGAGA
ATTAGAGTATGGCACGGGCTACCAGTTCCATGACGCACTCCAGGCTACGCCAGGTTCTGATGATGCATCTGCTCAATCCA
TGGGAATTCAACCTGCTGCTGGACATTCCATGGGAGATGATGATGAGACATGCTGTAATGATGATTTGTCGTCACTCCTT
GCTGATATTTCGAGAATCTTACTAGATGGCAATGGTGTTATAAACAATGAAGGAAACCCAGAGGGAAGTAATCAGGGCTT
GCACATCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis