Browse Element(s) Details


OsAffx.6627.1.S1_at

Description tigr:9638.m00859
TID=OsAffx.6627.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0986011/11Chalcone synthase 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6627.1.S1_at--78--8771Chr10:5101403..5101427 (25 bp)
TGTAGGCCATGGACTGTTCAGAGAT
LOC_Os10g09860
OsAffx.6627.1.S1_at--326--8611Chr10:5101373..5101397 (25 bp)
TGGTGCGATCATCGTTGGCGCTAAC
LOC_Os10g09860
OsAffx.6627.1.S1_at--1111--4731Chr10:5101325..5101349 (25 bp)
GCTGTTTGAGATGGTGGCCGCTTCA
LOC_Os10g09860
OsAffx.6627.1.S1_at--1041--4111Chr10:5101307..5101331 (25 bp)
CGCTTCACAGACCATGATTCCAGGA
LOC_Os10g09860
OsAffx.6627.1.S1_at--401--10731Chr10:5101264..5101288 (25 bp)
TTGCAGGCCACCGACAAAGGCATAG
LOC_Os10g09860
OsAffx.6627.1.S1_at--468--2312Chr09:14460094..14460461 (25 bp)
AAAGGCATAGATTTCCATCTCTCTA
NONE
OsAffx.6627.1.S1_at--535--9511Chr10:5101232..5101256 (25 bp)
TCTCTCTATCCAAGTGCTGACAGTG
LOC_Os10g09860
OsAffx.6627.1.S1_at--453--411Chr10:5101191..5101215 (25 bp)
ATCAGTGCTTGCTCGATGCGTTCCA
LOC_Os10g09860
OsAffx.6627.1.S1_at--371--6351Chr10:5101177..5101201 (25 bp)
GATGCGTTCCAGTCAGTCGGAAACA
LOC_Os10g09860
OsAffx.6627.1.S1_at--610--6711Chr10:5100995..5101019 (25 bp)
GTTCGTTCTTGATGAGCTGCGCCGC
LOC_Os10g09860
OsAffx.6627.1.S1_at--1069--3911Chr10:5100919..5100943 (25 bp)
CTGGCCTTTGGACCCGGAATCACAG
LOC_Os10g09860
Target Sequence 
TGTAGGCCATGGACTGTTCAGAGATGGCGCTGGTGCGATCATCGTTGGCGCTAACCCCTTGGCCGATGGCGAGCGCCCGC
TGTTTGAGATGGTGGCCGCTTCACAGACCATGATTCCAGGAACCGAGCACGCACTGGGCTTGCAGGCCACCGACAAAGGC
ATAGATTTCCATCTCTCTATCCAAGTGCTGACAGTGATAAAGGACAACATCCATCAGTGCTTGCTCGATGCGTTCCAGTC
AGTCGGAAACAAGGATCCTAACTGGAATGACCTCTTCTGGGCGGTGCACCCTGGTGGCCGTGCGATCCTTGACAATATAG
AGGGCAAGCTCCAGCTAGAGCCAGGGAAGCTTGCGGCGAGCCGCCACGTGCTGAGCGAGTACGGGAATATGAGTGGTGCG
ATGATCGCGTTCGTTCTTGATGAGCTGCGCCGCCGTCGGGAGAAGGAAGAAGGCGTGCAACAACAGCCTGAGTGGGGAGT
GATGCTGGCCTTTGGACCCGGAATCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis