Browse Element(s) Details


OsAffx.30361.1.S1_at

Description tigr:9638.m00848
TID=OsAffx.30361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0975010/11hypothetical protein
LOC_Os07g410141/11Glycosyl hydrolases family 17 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30361.1.S1_at--294--3951Chr10:5041576..5041600 (25 bp)
CGGATCCGGCGACAGTTGCCTTCTC
LOC_Os10g09750
OsAffx.30361.1.S1_at--767--5351Chr10:5041586..5041610 (25 bp)
GACAGTTGCCTTCTCCAACGCGGAT
LOC_Os10g09750
OsAffx.30361.1.S1_at--750--9491Chr10:5041597..5041621 (25 bp)
TCTCCAACGCGGATCTGGCACTGGC
LOC_Os10g09750
OsAffx.30361.1.S1_at--857--4671Chr10:5041666..5041690 (25 bp)
GCGGTTTCGGCCTCCTCCAATGCGA
LOC_Os10g09750
OsAffx.30361.1.S1_at--1041--8391Chr10:5041746..5041770 (25 bp)
GGCGCTGCCCCACGTGGATCCAGAA
LOC_Os10g09750
OsAffx.30361.1.S1_at--132--8351Chr10:5041788..5041986 (25 bp)
GGCCGATCCGGTGTAGACCAACTCG
LOC_Os10g09750
OsAffx.30361.1.S1_at--1074--8751NONE
TGTAGACCAACTCGCCCATGCGGTT
NONE
OsAffx.30361.1.S1_at--936--572Chr10:5041990..5042014 (25 bp)
ATGCGGTTGGCGCAACCGTATGCAA
LOC_Os10g09750
OsAffx.30361.1.S1_at--557--6611Chr10:5041995..5042019 (25 bp)
GTTGGCGCAACCGTATGCAAAGATG
LOC_Os10g09750
OsAffx.30361.1.S1_at--1075--5152Chr10:5042001..5042025 (25 bp)
GCAACCGTATGCAAAGATGCTGTTC
LOC_Os10g09750
OsAffx.30361.1.S1_at--167--4231Chr10:5042028..5042052 (25 bp)
CCGCATGCAAAAAGGCTTTCTGTAG
LOC_Os10g09750
Target Sequence 
CGGATCCGGCGACAGTTGCCTTCTCCAACGCGGATCTGGCACTGGCGCCCTTCCCCAACACGGATCCGGCGGCGGCCGCC
CTCCTCCAACGCGGTTTCGGCCTCCTCCAATGCGACCACCCCTCCCCCTCCTCACCGCCGCAGCGGTGGGGCGGCTCTGC
CGCCTCGGCTGGCGCTGCCCCACGTGGATCCAGAACCAAGGGCGGCGGGGGCGGCCGATCCGGTGTAGACCAACTCGCCC
ATGCGGTTGGCGCAACCGTATGCAAAGATGCTGTTCGCCCGCATGCAAAAAGGCTTTCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis