Browse Element(s) Details


OsAffx.18192.1.S1_at

Description tigr:9638.m00835
TID=OsAffx.18192.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0962011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09580NANA10+4935490..4943156transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09590NANA10+4947051..4947536hypothetical protein
LOC_Os10g09600OsAffx.20689.1.S1_x_at11/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20673.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09600OsAffx.20695.1.S1_x_at1/1110+4953486..4953926retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18192.1.S1_at--574--9511Chr10:4965592..4965616 (25 bp)
TCTCGATGACATTCTTCACGGTAGT
LOC_Os10g09620
OsAffx.18192.1.S1_at--737--5431Chr10:4965561..4965585 (25 bp)
GAACCTCTCAGTTTGGATTTACGTT
LOC_Os10g09620
OsAffx.18192.1.S1_at--155--191Chr10:4965545..4965569 (25 bp)
ATTTACGTTTGGATATTGCTGCCGA
LOC_Os10g09620
OsAffx.18192.1.S1_at--574--10591Chr10:4965530..4965554 (25 bp)
TTGCTGCCGAATCAGCCGAAGGTCT
LOC_Os10g09620
OsAffx.18192.1.S1_at--971--5511Chr10:4965490..4965514 (25 bp)
GAAAACCACCAATACAATCCTGCAT
LOC_Os10g09620
OsAffx.18192.1.S1_at--358--10211Chr10:4965405..4965429 (25 bp)
TTTGGGATTTCGAGGCTAATTGCCG
LOC_Os10g09620
OsAffx.18192.1.S1_at--667--5291Chr10:4965241..4965265 (25 bp)
GAAGGCCACATATTCTGACAACAAT
LOC_Os10g09620
OsAffx.18192.1.S1_at--605--6711Chr10:4965210..4965234 (25 bp)
GTTCGGAATTTTCTAGATGCTCACA
LOC_Os10g09620
OsAffx.18192.1.S1_at--775--4031Chr10:4965124..4965148 (25 bp)
CGTTCTTGATGGTCTCGTGAGGATT
LOC_Os10g09620
OsAffx.18192.1.S1_at--673--2631Chr10:4965084..4965108 (25 bp)
AACCTTGACGTGGATCAACGACCAG
LOC_Os10g09620
OsAffx.18192.1.S1_at--669--7051Chr10:4965048..4965072 (25 bp)
GTAACAGACGATCTTTTCATCTTGA
LOC_Os10g09620
Target Sequence 
TCTCGATGACATTCTTCACGGTAGTAACGGAGAACCTCTCAGTTTGGATTTACGTTTGGATATTGCTGCCGAATCAGCCG
AAGGTCTGGCATATATGCATTCGAAAACCACCAATACAATCCTGCATGGTAATGTTAAACCAGCTAACATACTTTTGGAT
GACAACTTTGTTCCAAAGATATCTGATTTTGGGATTTCGAGGCTAATTGCCGTAGATAAAAATCAACACACAGATAAAGT
CATTGGTGACATGAGTTATATGGATCCAGTTTACCTACAAACAGGACTATTAACGAAGAAAAGTGATGTCTACAGTTATG
GGGTTGTTCTCTTGGAGCTCATCAGCAGGAAGAAGGCCACATATTCTGACAACAATAGCTTAGTTCGGAATTTTCTAGAT
GCTCACAAAGAGAAAAGGAAAGCAACTGAGCTGTTTGATAAGGATATCACGCTGGCAGAAGACTTGGACGTTCTTGATGG
TCTCGTGAGGATTGCTGTGGAATGTTTAAACCTTGACGTGGATCAACGACCAGAAATGACAAAAGTAACAGACGATCTTT
TCATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis