Browse Element(s) Details


OsAffx.32108.1.S1_x_at

Description tigr:9640.m03901
TID=OsAffx.32108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3993011/11hypothetical protein
LOC_Os12g149391/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32108.1.S1_x_at--982--4811Chr12:24648576..24648600 (25 bp)
GCTCTTTTCCGCGATCAAGAAGTTG
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--119--9551Chr12:24648574..24648598 (25 bp)
TCTTTTCCGCGATCAAGAAGTTGAC
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--632--10291Chr12:24648571..24648595 (25 bp)
TTTCCGCGATCAAGAAGTTGACGGT
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--68--9291Chr12:24648569..24648593 (25 bp)
TCCGCGATCAAGAAGTTGACGGTAT
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--330--6651Chr12:24648226..24648579 (25 bp)
GTTGACGGTATTGATTGCTATTACT
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--1038--5731Chr12:24648223..24648244 (22 bp)
GACGGTATTGATTGCTATTACTTTT
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--294--10231Chr12:24648218..24648242 (25 bp)
TATTGATTGCTATTACTTTTGCAGG
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--344--2052Chr12:24648204..24648228 (25 bp)
ACTTTTGCAGGAGCTATGACATCAT
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--325--4872Chr12:24648192..24648216 (25 bp)
GCTATGACATCATTCCTTGCGGCAA
LOC_Os12g39930
OsAffx.32108.1.S1_x_at--920--9233Chr12:8541894..8541918 (25 bp)
TCCTTGCGGCAACCACTGGAATATT
LOC_Os12g14939
OsAffx.32108.1.S1_x_at--703--1711Chr12:24648168..24648192 (25 bp)
ACCACTGGAATATTACAGGGCTGAT
LOC_Os12g39930
Target Sequence 
GCTCTTTTCCGCGATCAAGAAGTTGACGGTATTGATTGCTATTACTTTTGCAGGAGCTATGACATCATTCCTTGCGGCAA
CCACTGGAATATTACAGGGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32108.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis