Browse Element(s) Details


OsAffx.32339.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=cox3
TID=OsAffx.32339.1
CNT=1
FEA=DNA_2
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome c oxidase subunit 3 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Cytochrome c oxidase subunit 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g399302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39910OsAffx.20040.1.S1_x_at11/1112+24623929..24624704hypothetical protein
LOC_Os12g39920OsAffx.32107.1.S1_at7/1112+24636234..24638070expressed protein
LOC_Os12g39920Os.11758.1.S1_at1/1112+24636234..24638070expressed protein
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32339.1.S1_x_at--858--7891NONE
GGTTCTATTCTCTTCATAGTCTCGG
NONE
OsAffx.32339.1.S1_x_at--825--111NONE
ATTCTTCTTTGGCACCTACGGTAGA
NONE
OsAffx.32339.1.S1_x_at--736--2511NONE
AACTTGGGCTCATCATGCTATACTC
NONE
OsAffx.32339.1.S1_x_at--728--5151NONE
GCAACCGTTTCACTGGCTCTAGTAT
NONE
OsAffx.32339.1.S1_x_at--796--4811NONE
GCTCTAGTATCCACTGGCTTTCAAG
NONE
OsAffx.32339.1.S1_x_at--117--2732Chr01:12682450..12682478 (25 bp)
AAGCACCCTCCACTATTTCGGATAG
NONE
OsAffx.32339.1.S1_x_at--1085--7871Chr12:24648271..24648295 (25 bp)
GGTTCTACCTTTTTCTTAGCAACTG
LOC_Os12g39930
OsAffx.32339.1.S1_x_at--177--5151NONE
GCAACTGGCTTTCATGGTTTTCATG
NONE
OsAffx.32339.1.S1_x_at--981--7831NONE
GGTACTCTTTTCTTGATCGTATGTG
NONE
OsAffx.32339.1.S1_x_at--831--1511NONE
AGCAGCTGCATGGTACTGGCATTTT
NONE
OsAffx.32339.1.S1_x_at--53--6951NONE
GTAGACGTGGTTCGGTTATTCCCAT
NONE
Target Sequence 
GGTTCTATTCTCTTCATAGTCTCGGAGGTTATGTTCCTTTTTGCTTTTTTTTGGGCTTCTTCTCATTCTTCTTTGGCACC
TACGGTAGAGATCGGAGGTATTTGGCCCCCAAAAGGGATTGGGGTTTTAGATCCTTGGGAAATCCCTCTTCTTAATACCC
CTATTCTCCCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGTTTAC
GCTTTAGTAGCAACCGTTTCACTGGCTCTAGTATCCACTGGCTTTCAAGGAATGGAATATTACCAAGCACCCTCCACTAT
TTCGGATAGTATTTACGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCT
TGATCGTATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGAAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTAC
TGGCATTTTGTAGACGTGGTTCGGTTATTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32339.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis