Browse Element(s) Details


Os.14325.1.S1_at

Description gb:AK070028.1
DB_XREF= gi:32980052
TID=Os.14325.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034G13, full insert sequence.
FL= gb:AK070028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g399709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39990NANA12+24690244..24691041Dof domain, zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14325.1.S1_at--970--5631NONE
GACACCACAAGTCGGATGCGGAGTT
NONE
Os.14325.1.S1_at--564--5291Chr12:24664651..24664675 (25 bp)
GAATGGAGGCTCACTTGAGCAGGCC
LOC_Os12g39970
Os.14325.1.S1_at--536--6591Chr12:24664611..24664635 (25 bp)
GATTGCTTAATGTCATCATGCTTAA
LOC_Os12g39970
Os.14325.1.S1_at--732--5311Chr12:24664567..24664591 (25 bp)
GAAGGATTCTTCTGCTGTATTTATG
LOC_Os12g39970
Os.14325.1.S1_at--79--10611Chr12:24664558..24664582 (25 bp)
TTCTGCTGTATTTATGTCCACCATG
LOC_Os12g39970
Os.14325.1.S1_at--499--9771Chr12:24664532..24664556 (25 bp)
TAAGTATGTGCATCCATCCTTGGGC
LOC_Os12g39970
Os.14325.1.S1_at--381--9231Chr12:24664516..24664540 (25 bp)
TCCTTGGGCATCTACTACTTAACTA
LOC_Os12g39970
Os.14325.1.S1_at--860--611Chr12:24664465..24664489 (25 bp)
ATGCTGAGACAATCCTTAGGCATCT
LOC_Os12g39970
Os.14325.1.S1_at--153--5451Chr12:24664387..24664411 (25 bp)
GACAATTTACTACTCCTTTTTCTAT
LOC_Os12g39970
Os.14325.1.S1_at--644--1991NONE
ACTCCTTTTTCTATATGTGCTTCGA
NONE
Os.14325.1.S1_at--999--4891Chr12:24664347..24664371 (25 bp)
GCTTAATTTCGAGTACTTGCAATCT
LOC_Os12g39970
Target Sequence 
GACACCACAAGTCGGATGCGGAGTTTAATGATGCAGCAGGCAAAACAAGAAAGTGCAATCGAAAAGATTGGACGTGAAAT
GATGCAGAAGGAAAAACAAGAGAGAGCAATGCAAAAGAATGGATTGGAGATGGGATCGAATAGTTGGGAACTAAGCNAAA
ATGAAGGGAAAACNACAGATGGCAACGGAAAGTAGAGGAATGGAGGCTCACTTGAGCAGGCCGCTTGCTGGATTGAAGAT
TGCTTAATGTCATCATGCTTAAAGGGATTGGAGGGACAATCGAAGGATTCTTCTGCTGTATTTATGTCCACCATGTTAAG
TATGTGCATCCATCCTTGGGCATCTACTACTTAACTATATCTAACTAATTATGGGTATGTGCTATGCTGAGACAATCCTT
AGGCATCTACTACTTAACTATATCTAAGTATCTAAGTAGTTATGGGTATGTGCTATGCTGAGACAATTTACTACTCCTTT
TTCTATATGTGCTTCGAGAATATCCNCNGTTTGTCTTGTTTATAAGCTTAATTTCGAGTACTTGCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis