Browse Element(s) Details


OsAffx.31745.2.S1_s_at

Description tigr:9640.m01450
TID=OsAffx.31745.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1493011/11Mitochondrial 22 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein
LOC_Os12g14920OsAffx.19677.1.S1_s_at11/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_s_at9/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_x_at4/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14930OsAffx.31745.2.S1_s_at11/1112+8538086..8538679Mitochondrial 22 kDa protein, putative, expressed
LOC_Os12g14939OsAffx.32108.1.S1_x_at1/1112+8541746..8541999hypothetical protein
LOC_Os12g14948NANA12+8545147..8545393NA
LOC_Os12g14960OsAffx.18193.1.S1_at1/1112+8559512..8560324Transposable element protein, putative, Retrotrans_gag
LOC_Os12g14972NANA12+8561400..8561778NA

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0000276cellular_componentproton-transporting ATP synthase complex, coupling factor F(o) (sensu Eukaryota)
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31745.2.S1_s_at--854--6491Chr12:8538545..8538569 (25 bp)
GATAGTAGCTCGTTGTTTTATAGGC
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--26--10551Chr12:8538519..8538543 (25 bp)
TTCTCATATTCAGTCGGAAGAGTTT
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--1061--5691Chr12:8538488..8538512 (25 bp)
GACTTTCAAAGAAACTCTCGACGGG
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--854--6551Chr12:8538381..8538405 (25 bp)
GATTACTTAGGATCAGCTTGCGAAT
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--1068--9651Chr12:8538369..8538393 (25 bp)
TCAGCTTGCGAATTTGCAGCGCCGT
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--780--10731Chr12:8538356..8538380 (25 bp)
TTGCAGCGCCGTAGTAGAATCATTA
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--138--5251Chr12:8538340..8538364 (25 bp)
GAATCATTACCAACGGCACGCTGTG
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--651--3351Chr12:8538324..8538348 (25 bp)
CACGCTGTGCGCCTAAGTGCGAAAA
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--468--5151Chr12:8538293..8538317 (25 bp)
GCAAGCTTTGTTATGCCGAAACCTA
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--705--3271Chr12:8538255..8538279 (25 bp)
CAACACTTCTAAATGCCACTTCTTC
LOC_Os12g14930
OsAffx.31745.2.S1_s_at--660--272Chr06:14647338..14647358 (21 bp)
ATAGTTACAGGTTTTCACTTTTCAG
NONE
Target Sequence 
GATAGTAGCTCGTTGTTTTATAGGCCTTCTCATATTCAGTCGGAAGAGTTTAGGTAAGACTTTCAAAGAAACTCTCGACG
GGAGAATTGAGTCTATTCAGGAAGAATTGCAGCAATTGTTCAATCCTAACGAAGTAATTCCGGGGGAATCCAATGAACAA
CAACGATTACTTAGGATCAGCTTGCGAATTTGCAGCGCCGTAGTAGAATCATTACCAACGGCACGCTGTGCGCCTAAGTG
CGAAAAGACAGTGCAAGCTTTGTTATGCCGAAACCTAAATGTAAAGTCAGCAACACTTCTAAATGCCACTTCTTCCCGTC
GCATCCGTCTTCAAGACGATATAGTTACAGGTTTTCACTTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31745.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis