Browse Element(s) Details


OsAffx.30787.3.S1_x_at

Description tigr:9639.m00199
TID=OsAffx.30787.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0293011/11hypothetical protein
LOC_Os12g066901/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02890OsAffx.20604.2.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.10371.1.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.22699.1.S1_x_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02900NANA11+995579..997303retrotransposon protein, putative, unclassified
LOC_Os11g02910NANA11+999364..1002338hypothetical protein
LOC_Os11g02920NANA11+1007611..1009010hypothetical protein
LOC_Os11g02930OsAffx.30787.3.S1_x_at11/1111+1010286..1011921hypothetical protein
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30787.3.S1_x_at--345--6511Chr11:1011633..1011681 (25 bp)
GATATCTGGCCGGATCGCAATTGGG
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--195--10131Chr11:1011631..1011679 (25 bp)
TATCTGGCCGGATCGCAATTGGGTG
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--233--31Chr11:1011614..1011638 (25 bp)
ATTGGGTGGCGAAGTGGTTCTACCT
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--555--8011Chr11:1011545..1011569 (25 bp)
GGAGGCGGCGTAGGGTGATTGCACC
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--785--7752Chr12:3257035..3257059 (25 bp)
GGTGATTGCACCGAACAGGAAGCCC
LOC_Os12g06690
OsAffx.30787.3.S1_x_at--895--8511Chr11:1011485..1011509 (25 bp)
TGGAAGCCCGGTTCGCCTTGCTGCA
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--1059--10631Chr11:1011474..1011498 (25 bp)
TTCGCCTTGCTGCACAAGGTCTGCT
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--142--10531Chr11:1011174..1011198 (25 bp)
TTCAGCCAGCTGCTATCGCGGCAGG
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--499--4671Chr11:1011157..1011181 (25 bp)
GCGGCAGGCGGCAAGACGGGCAAAC
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--742--3231Chr11:1011146..1011170 (25 bp)
CAAGACGGGCAAACCGGTGTAGGAT
LOC_Os11g02930
OsAffx.30787.3.S1_x_at--734--7591Chr11:1011140..1011164 (25 bp)
GGGCAAACCGGTGTAGGATCGAGAT
LOC_Os11g02930
Target Sequence 
GATATCTGGCCGGATCGCAATTGGGTGGCGAAGTGGTTCTACCTCTCCATCCCCTTCGAGGCTGGGTCCGATGCGGCGAA
AGCCCTCCGGAGGCGGCGTAGGGTGATTGCACCGAACAGGAAGCCCAAGGTCGCCGTCGATGGCGCCATGGAAGCCCGGT
TCGCCTTGCTGCACAAGGTCTGCTCCCGCCTTAGCTGTCGCGACTTGGTGGAGGAGTTCTGCATGCTTCGCATTTCCCCC
TCTCCCAGTCGTGGCAAGTCGAGGTCGATGGCTTGCCGAAGCTCGTCATGCCTGCGGGGGCGAACGGCCGACACCGAAGC
CCGAAAGTTGATCGGCGACGTGTCGGTCGCTGAGTTCAGCCAGCTGCTATCGCGGCAGGCGGCAAGACGGGCAAACCGGT
GTAGGATCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30787.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis