Browse Element(s) Details


OsAffx.30788.1.S1_at

Description tigr:9639.m00201
TID=OsAffx.30788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MQK4.28
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0295011/11Auxin Efflux Carrier family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02900NANA11+995579..997303retrotransposon protein, putative, unclassified
LOC_Os11g02910NANA11+999364..1002338hypothetical protein
LOC_Os11g02920NANA11+1007611..1009010hypothetical protein
LOC_Os11g02930OsAffx.30787.3.S1_x_at11/1111+1010286..1011921hypothetical protein
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0009958biological_processpositive gravitropism
GO:0048364biological_processroot development
GO:0009925cellular_componentbasal plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30788.1.S1_at--650--10411Chr11:1023795..1023819 (25 bp)
TTATAGCGGCTGATAGCATAGCAAA
LOC_Os11g02950
OsAffx.30788.1.S1_at--754--5112Chr11:1023815..1023839 (25 bp)
GCAAAGTTAATTATAGTCGCCGCAA
LOC_Os11g02950
OsAffx.30788.1.S1_at--162--6771Chr11:1023820..1023844 (25 bp)
GTTAATTATAGTCGCCGCAATCAGC
LOC_Os11g02950
OsAffx.30788.1.S1_at--204--1551Chr11:1023842..1023866 (25 bp)
AGCATTGGTGTTATGTTGAAATTCC
LOC_Os11g02950
OsAffx.30788.1.S1_at--10--3372Chr11:1023892..1023916 (25 bp)
CACCGACTGGTGTATAAGCGGCTTT
LOC_Os11g02950
OsAffx.30788.1.S1_at--344--8652Chr11:1023997..1024021 (25 bp)
TGTGGTACAACTATCAATCTTCCAG
LOC_Os11g02950
OsAffx.30788.1.S1_at--325--9571Chr11:1024087..1024111 (25 bp)
TCATGACGAGTCTAACAGTTATGAA
LOC_Os11g02950
OsAffx.30788.1.S1_at--548--571Chr11:1024117..1024141 (25 bp)
ATCCTTCATAGATGATGATACGGTC
LOC_Os11g02950
OsAffx.30788.1.S1_at--332--6971Chr11:1024146..1024170 (25 bp)
GTAGCTCGGGTACCAGCGAAGATAT
LOC_Os11g02950
OsAffx.30788.1.S1_at--851--811Chr11:1024251..1024275 (25 bp)
ATGGTGCCAGGTTACCGCTCTTCAA
LOC_Os11g02950
OsAffx.30788.1.S1_at--648--2852Chr11:1024274..1024463 (25 bp)
AAGTCGGTGGCACGTCGCACCTCAC
LOC_Os11g02950
Target Sequence 
TTATAGCGGCTGATAGCATAGCAAAGTTAATTATAGTCGCCGCAATCAGCATTGGTGTTATGTTGAAATTCCGGAAAGAG
GGATTATGCGCCGCTGTCACCGACTGGTGTATAAGCGGCTTTTCTCTTGCGTCACTCACCAATTCTTTGGTTGTGGGCAT
GCCCATGGCGAGGGCCATGTATGGCAACTGGGCAGGGCAAATTGTGGTACAACTATCAATCTTCCAGGCAATAGTGTGGC
TCACCTCACTCGTGGTGGTCCTGGAAGTAAGGAAAGCTTTCGTCTCCGACGCTCATGACGAGTCTAACAGTTATGAAGAA
GGATCCTTCATAGATGATGATACGGTCGTCGGTAGCTCGGGTACCAGCGAAGATATGCAAAGCCTCGAAGAGGGGGTTTC
AGATGCCACGAACCAAGATCTCAGGGGGGAGGAGGCAGTGTCAGTGGCAGTGGTGAATGGTGCCAGGTTACCGCTCTTCA
AGTCGGTGGCACGTCGCACCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis