Browse Element(s) Details


OsAffx.18645.1.S1_at

Description tigr:9639.m00205
TID=OsAffx.18645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0299011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18645.1.S1_at--98--4651Chr11:1041640..1041664 (25 bp)
GCGTCCTTGTTCACTGATGGTTCAA
LOC_Os11g02990
OsAffx.18645.1.S1_at--956--2191Chr11:1041613..1041637 (25 bp)
ACAAAAGGCCTCTTCATCGATGCTT
LOC_Os11g02990
OsAffx.18645.1.S1_at--900--5931Chr11:1041565..1041589 (25 bp)
GAGCAGGAGTTTAGCCCGATGTCAG
LOC_Os11g02990
OsAffx.18645.1.S1_at--132--8531Chr11:1041236..1041260 (25 bp)
TGGACTCTGTACTGCGTCAACCGGA
LOC_Os11g02990
OsAffx.18645.1.S1_at--346--7091Chr11:1041221..1041245 (25 bp)
GTCAACCGGAACCATGGGCGCATAG
LOC_Os11g02990
OsAffx.18645.1.S1_at--572--7571Chr11:1041206..1041230 (25 bp)
GGGCGCATAGATGTCTTTGACTCCA
LOC_Os11g02990
OsAffx.18645.1.S1_at--89--3151Chr11:1041179..1041203 (25 bp)
AATTACCCTGCTTTGAATACGGAGT
LOC_Os11g02990
OsAffx.18645.1.S1_at--797--2571Chr11:1041115..1041139 (25 bp)
AACGGCTCAGCGATAGGCTCTATGC
LOC_Os11g02990
OsAffx.18645.1.S1_at--1084--2271Chr11:1041038..1041062 (25 bp)
AAATGCCCAGTCATGCTAAAGCCCA
LOC_Os11g02990
OsAffx.18645.1.S1_at--540--6091Chr11:1040844..1040868 (25 bp)
GAGTACAACGACTTGCGTTCGCAGA
LOC_Os11g02990
OsAffx.18645.1.S1_at--1144--6331Chr11:1040821..1040845 (25 bp)
GATGCTGTACAACATGGTCTTCCAC
LOC_Os11g02990
Target Sequence 
GCGTCCTTGTTCACTGATGGTTCAATGACAAAAGGCCTCTTCATCGATGCTTTCATAAATTTGATTCTGCATGATGAGCA
GGAGTTTAGCCCGATGTCAGCTGGGGACCGAATCTTCCTGCCAACCAGTGTATCTGTTATAGTACCTGTTATACACCACA
GCCACTGGACTCTGTACTGCGTCAACCGGAACCATGGGCGCATAGATGTCTTTGACTCCAACAATTACCCTGCTTTGAAT
ACGGAGTACAAGGATCACCATGGTGACCTAGGGAGTCGTGTTGTGAAACGGCTCAGCGATAGGCTCTATGCAGCAGCCAG
GACTGCCTTCAAGAGGTTTGGGAACCAGAAGCTGGTCAGGAACAAATGCCCAGTCATGCTAAAGCCCAATGATTGCGCAT
TTTTTGTCATGAGGTACATGGAGCTATATGAAGGCGATGACTCCCCCCTGATACAAGTCGCTGAATCGGAGGAGTACAAC
GACTTGCGTTCGCAGATGCTGTACAACATGGTCTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis