Browse Element(s) Details


OsAffx.6974.1.S1_at

Description tigr:9639.m00203
TID=OsAffx.6974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0296411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02920NANA11+1007611..1009010hypothetical protein
LOC_Os11g02930OsAffx.30787.3.S1_x_at11/1111+1010286..1011921hypothetical protein
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6974.1.S1_at--157--9751Chr11:1036349..1036373 (25 bp)
TAATTGGGCTCCTTTTCACAGCTAG
LOC_Os11g02964
OsAffx.6974.1.S1_at--398--3111Chr11:1037110..1037134 (25 bp)
AATATGCTTACCATGCTGGGTTTGA
LOC_Os11g02964
OsAffx.6974.1.S1_at--1070--5451Chr11:1037223..1037247 (25 bp)
GAACGTGAGCGAAACCATAGGACAA
LOC_Os11g02964
OsAffx.6974.1.S1_at--253--8891Chr11:1037300..1037324 (25 bp)
TGAGGTGTCGTCTGTTGTGTACGAT
LOC_Os11g02964
OsAffx.6974.1.S1_at--416--6631Chr11:1037328..1037352 (25 bp)
GTTGTGCTTGAGCATAACCACCCGC
LOC_Os11g02964
OsAffx.6974.1.S1_at--1013--4531Chr11:1037357..1037381 (25 bp)
GCCCTCTCTAGCAGCGGTAAAGCAC
LOC_Os11g02964
OsAffx.6974.1.S1_at--919--2711Chr11:1037376..1037400 (25 bp)
AAGCACATGAGATCCCATAAGCACA
LOC_Os11g02964
OsAffx.6974.1.S1_at--1019--4451Chr11:1037461..1037485 (25 bp)
GCCTAATTGGAGTGCTTGCTGACAT
LOC_Os11g02964
OsAffx.6974.1.S1_at--1096--4911Chr11:1037474..1037498 (25 bp)
GCTTGCTGACATGCATGGTGGACAA
LOC_Os11g02964
OsAffx.6974.1.S1_at--508--7731Chr11:1037490..1037514 (25 bp)
GGTGGACAAGAGAACATCCCATTCA
LOC_Os11g02964
OsAffx.6974.1.S1_at--314--4331Chr11:1037508..1037532 (25 bp)
CCATTCACTTCACGCAATCTTGAGA
LOC_Os11g02964
Target Sequence 
TAATTGGGCTCCTTTTCACAGCTAGGCATATGTTTAGTGGGCTGGATGATGACATGGTGCCGAAACAAAATATGGTGTTC
AAAGACTATGACAGTGTATATGATTTCTATGAGAAATATGCTTACCATGCTGGGTTTGACATAAGGAAGAGTAGAACTAA
GAAGACTATAAGAGAAATATGTTGCTCCAGGGAGGGGCACCATAAATTTTATAAAGGCGATGAATTTGAACGTGAGCGAA
ACCATAGGACAAAGAAAACTGGTTGCAAGGCATACATGAAGGTGAAAAATGTGATGGTTGATGGTGAGGTGTCGTCTGTT
GTGTACGATGTTGTTGTGCTTGAGCATAACCACCCGCTCACGCCCTCTCTAGCAGCGGTAAAGCACATGAGATCCCATAA
GCACACGGATGACACGATAATGGAGTTTGTGAACACCATGCAAGAAAACAGGGTGGCGCAGAACAGCCTAATTGGAGTGC
TTGCTGACATGCATGGTGGACAAGAGAACATCCCATTCACTTCACGCAATCTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis