Browse Element(s) Details


OsAffx.6976.1.S1_at

Description tigr:9639.m00210
TID=OsAffx.6976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0304011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein
LOC_Os11g03050Os.38774.1.S1_s_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050OsAffx.30790.1.S1_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050Os.33623.1.S1_x_at2/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03060Os.34563.1.S1_at11/1111+1077105..1081413SNF7 family protein, expressed
LOC_Os11g03070Os.53465.1.S1_at1/1111+1084636..1087189Sodium/hydrogen exchanger family protein
LOC_Os11g03080OsAffx.6977.1.S1_at11/1111+1088498..1089132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6976.1.S1_at--184--2811Chr11:1062176..1062200 (25 bp)
AAGATGCAGCAGCTCCAACTCCTGC
LOC_Os11g03040
OsAffx.6976.1.S1_at--812--9691Chr11:1061944..1061968 (25 bp)
TCAAATCGGCTAGAGAATTCCTTGG
LOC_Os11g03040
OsAffx.6976.1.S1_at--904--3151Chr11:1061929..1061953 (25 bp)
AATTCCTTGGATGTCTTGGTAGTCG
LOC_Os11g03040
OsAffx.6976.1.S1_at--332--751Chr11:1061919..1061943 (25 bp)
ATGTCTTGGTAGTCGATTGTGGATC
LOC_Os11g03040
OsAffx.6976.1.S1_at--518--3051Chr11:1061894..1061918 (25 bp)
AATCAGGGCCTGGTTCCACGAAATT
LOC_Os11g03040
OsAffx.6976.1.S1_at--1054--6371Chr11:1061861..1061885 (25 bp)
GATCCCAGAAGACTTAGCCACTACG
LOC_Os11g03040
OsAffx.6976.1.S1_at--176--9951Chr11:1061840..1061864 (25 bp)
TACGCTAACTCCAGCTTTTTATCTT
LOC_Os11g03040
OsAffx.6976.1.S1_at--18--7091Chr11:1061731..1061755 (25 bp)
GTCAATCGGCAATCTGTCAATGAGG
LOC_Os11g03040
OsAffx.6976.1.S1_at--101--8071Chr11:1061708..1061732 (25 bp)
GGAGAAAGCCAACCTAGATCAGCTA
LOC_Os11g03040
OsAffx.6976.1.S1_at--953--1271Chr11:1061693..1061717 (25 bp)
AGATCAGCTATCTTTTGGCCCTTGT
LOC_Os11g03040
OsAffx.6976.1.S1_at--900--8691Chr11:1061671..1061695 (25 bp)
TGTCGGGACCCCAATTACGATCCCT
LOC_Os11g03040
Target Sequence 
AAGATGCAGCAGCTCCAACTCCTGCTGTCCCTGTTTTAGCCGATATGTTCTCTTTTGACATAAGACAATTCTGGGATGAA
GAAGAAGAAGACACCTCAAGCAAAGCCTTAGCTCCTCTAGCCGATGATGTTAAGAGAACTCTTATGGAAATATCAAATCG
GCTAGAGAATTCCTTGGATGTCTTGGTAGTCGATTGTGGATCAATCAGGGCCTGGTTCCACGAAATTCAAAATATGATCC
CAGAAGACTTAGCCACTACGCTAACTCCAGCTTTTTATCTTGAACAACATCAATTCAAGTTGGAGAAAGCAAGACAAAGG
ATAGCCAATAGGCGAGAAAGAAAAGATATAGAGGCAACCATCCAAGTCAATCGGCAATCTGTCAATGAGGAGAAAGCCAA
CCTAGATCAGCTATCTTTTGGCCCTTGTCGGGACCCCAATTACGATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis