Browse Element(s) Details


Os.34563.1.S1_at

Description gb:AK070935.1
DB_XREF= gi:32980958
TID=Os.34563.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068B07, full insert sequence.
FL= gb:AK070935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0306011/11SNF7 family protein, expressed
LOC_Os12g028304/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein
LOC_Os11g03050Os.38774.1.S1_s_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050OsAffx.30790.1.S1_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050Os.33623.1.S1_x_at2/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03060Os.34563.1.S1_at11/1111+1077105..1081413SNF7 family protein, expressed
LOC_Os11g03070Os.53465.1.S1_at1/1111+1084636..1087189Sodium/hydrogen exchanger family protein
LOC_Os11g03080OsAffx.6977.1.S1_at11/1111+1088498..1089132hypothetical protein
LOC_Os11g03090OsAffx.22492.1.S1_x_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03090OsAffx.22492.1.S1_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.5.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.2.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34563.1.S1_at--40--2371Chr11:1078222..1078682 (25 bp)
AAAGCGCTGCAATTCAGTGTCTAAA
LOC_Os11g03060
Os.34563.1.S1_at--872--10671Chr11:1078155..1078178 (24 bp)
TTCCAATTGCGAGTTCATGATCAGA
LOC_Os11g03060
Os.34563.1.S1_at--83--4591Chr11:1078008..1078032 (25 bp)
GCGCAAAGGCAACCACAGATACCGT
LOC_Os11g03060
Os.34563.1.S1_at--869--312Chr12:1012221..1012701 (25 bp)
ATACCGTTGATGCTTTGCGCTCTGG
LOC_Os12g02830
Os.34563.1.S1_at--872--4572Chr12:1012205..1012229 (25 bp)
GCGCTCTGGATCATCTGCTGTCAAA
LOC_Os12g02830
Os.34563.1.S1_at--928--8731Chr11:1077956..1077980 (25 bp)
TGTCAAAGCTATTCATCAGTCAGTG
LOC_Os11g03060
Os.34563.1.S1_at--789--7991Chr11:1077588..1077612 (25 bp)
GGAGGCACTTGCAACACCAATTGGC
LOC_Os11g03060
Os.34563.1.S1_at--123--1712Chr12:1011799..1011822 (24 bp)
ACCAATTGGCGCTTCTGCTGATTTC
LOC_Os12g02830
Os.34563.1.S1_at--468--5431Chr11:1077321..1077345 (25 bp)
GAACCACCTCAGAGTACACGCATGG
LOC_Os11g03060
Os.34563.1.S1_at--74--851Chr11:1077222..1077246 (25 bp)
ATGGCGCTTTAATCACAGTTTGGAG
LOC_Os11g03060
Os.34563.1.S1_at--228--5672Chr12:1011384..1011408 (25 bp)
GACATCCTGTTTGTGTAGTGTACTC
LOC_Os12g02830
Target Sequence 
AAAGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTGAGCAGCTAGCAAATTTCCAATTGCGA
GTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCAACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGC
TGTCAAAGCTATTCATCAGTCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAATA
TGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAGGATGAACTAGAAGCAGAGCTG
GAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCTGAACCACCTCAGAGTACACGCATGGNACCATCAGCGAGAGT
TACAACTTCATCTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCACAGTTTG
GAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis