Browse Element(s) Details


Os.33623.1.S1_x_at

Description gb:AK099804.1
DB_XREF= gi:32985013
TID=Os.33623.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retroelement pol polyprotein (P0004A09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098C19, full insert sequence.
FL= gb:AK099804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g452906/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g030502/11phosphoethanolamine cytidylyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45260OsAffx.27648.1.S1_x_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45260OsAffx.27648.1.S1_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45290Os.33623.2.S1_at11/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45290Os.33623.1.S1_x_at6/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45310NANA1+26047920..26048645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33623.1.S1_x_at--667--5872Chr01:26039293..26039317 (25 bp)
GAGCGCGAATTGATCGGCCTCGTCA
LOC_Os01g45290
Os.33623.1.S1_x_at--521--3652Chr01:26039358..26039382 (25 bp)
CTTCATCATTCGCACGGACCATTAT
LOC_Os01g45290
Os.33623.1.S1_x_at--1088--8072Chr01:26039373..26039397 (25 bp)
GGACCATTATAGCTTGCGGTTCCTG
LOC_Os01g45290
Os.33623.1.S1_x_at--720--91Chr12:1001358..1001382 (25 bp)
ATTCCGCAGCATCATTGGGCGAGCA
NONE
Os.33623.1.S1_x_at--676--5952Chr01:26039439..26039463 (25 bp)
GAGCAAGCTGCTGGGATTCGATTTT
LOC_Os01g45290
Os.33623.1.S1_x_at--193--7932Chr01:26039452..26039476 (25 bp)
GGATTCGATTTTGCCGTCGAGTACA
LOC_Os01g45290
Os.33623.1.S1_x_at--1148--3291Chr12:1001250..1001274 (25 bp)
CACTTGGCGGAAGCGTTTGTTCTAT
NONE
Os.33623.1.S1_x_at--576--5792Chr01:26039626..26039650 (25 bp)
GACGACATCATTCGCGGCGCTAAAC
LOC_Os01g45290
Os.33623.1.S1_x_at--1010--6811Chr12:1001077..1001101 (25 bp)
GTTTATCCCGGAGTCCTTTTCTCAT
NONE
Os.33623.1.S1_x_at--987--7832Chr12:1001045..1001069 (25 bp)
GGTACACTTCTGTTATGATCTGGAA
NONE
Os.33623.1.S1_x_at--723--5152Chr12:1000987..1001011 (25 bp)
GCAACTGTGTCTGGAATCTGGATGT
NONE
Target Sequence 
GAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCAC
GGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCAAGCTGCTGG
GATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTG
GCGGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCT
GGCAAGCCTTCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTATTCAAGG
ATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTGTTATGATCTGGAACTGAGCAACTGATATT
TGTGTGGGTCGGTGACAGCAACTGTGTCTGGAATCTGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33623.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis