Browse Element(s) Details


Os.33623.2.S1_at

Description gb:NM_192262.1
DB_XREF= gi:34911607
GEN=P0004A09.29
TID=Os.33623.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33623 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement pol polyprotein (P0004A09.29), mRNA.
PROD=putative retroelement pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4529011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45260OsAffx.27648.1.S1_x_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45260OsAffx.27648.1.S1_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45290Os.33623.2.S1_at11/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45290Os.33623.1.S1_x_at6/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45310NANA1+26047920..26048645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33623.2.S1_at--697--9431Chr01:26040465..26040489 (25 bp)
TCGGGATCAGTTTTTGGTAGCCATC
LOC_Os01g45290
Os.33623.2.S1_at--127--9291Chr01:26040488..26040512 (25 bp)
TCCGTGATCGGCTGGAGCAGGCACA
LOC_Os01g45290
Os.33623.2.S1_at--548--9771Chr01:26040645..26040669 (25 bp)
TAAGTTCTATGGTCCCTACCAGATC
LOC_Os01g45290
Os.33623.2.S1_at--1043--1271Chr01:26040665..26040689 (25 bp)
AGATCGTCGCTTGCATCGGGTCGGT
LOC_Os01g45290
Os.33623.2.S1_at--155--5091Chr01:26040726..26040750 (25 bp)
GCACGACGTTTTCCATGTGGGACTG
LOC_Os01g45290
Os.33623.2.S1_at--724--8651Chr01:26040741..26040765 (25 bp)
TGTGGGACTGCTTAAACCGTTTCGG
LOC_Os01g45290
Os.33623.2.S1_at--389--4091Chr01:26040800..26040824 (25 bp)
CGACGCAGCATGGTCAAGTCTGTTT
LOC_Os01g45290
Os.33623.2.S1_at--532--8771Chr01:26040820..26040844 (25 bp)
TGTTTGGAACCACAGTCAGTCTCCC
LOC_Os01g45290
Os.33623.2.S1_at--25--9391Chr01:26040858..26040882 (25 bp)
TCGAGGAGTCCGTCAAGTCTTGGTT
LOC_Os01g45290
Os.33623.2.S1_at--724--1391Chr01:26040906..26040930 (25 bp)
AGACGCATCGTGGTTGTCGCTGGAT
LOC_Os01g45290
Os.33623.2.S1_at--133--10831Chr01:26040919..26040943 (25 bp)
TTGTCGCTGGATGAATTCCGTGCAT
LOC_Os01g45290
Target Sequence 
TCGGGATCAGTTTTTGGTAGCCATCCGTGATCGGCTGGAGCAGGCACAGCAGGTGTACAAGCAGGCCTATGACAAGAAGC
ATCGGGAGTTGAATTTTGATGTGGGCGATTGGGTTTGGCTGCGCCTTCTGCATCGGCCGATGGCGTCGCTCGACACGAGG
GGCCGTGGCAAGCTGGGGCCTAAGTTCTATGGTCCCTACCAGATCGTCGCTTGCATCGGGTCGGTCGCTTATCGTCTTCG
CCTTCCGCCAGGAGCTCGTCTGCACGACGTTTTCCATGTGGGACTGCTTAAACCGTTTCGGGGTGAGCCGCCAAGCACTC
TGCCTCCGTTGCCGCCGACGCAGCATGGTCAAGTCTGTTTGGAACCACAGTCAGTCTCCCGCAGTCGTTTGGCTCGAGGA
GTCCGTCAAGTCTTGGTTCAGTGGAAGAACAAGCCGGCGGCAGACGCATCGTGGTTGTCGCTGGATGAATTCCGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33623.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis