Browse Element(s) Details


OsAffx.23667.1.S1_at

Description tigr:9629.m04328
TID=OsAffx.23667.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=von Willebrand factor type A domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4532011/11von Willebrand factor type A domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45290Os.33623.2.S1_at11/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45290Os.33623.1.S1_x_at6/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45310NANA1+26047920..26048645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23667.1.S1_at--1056--8051Chr01:26050258..26050282 (25 bp)
GGAGAATTTCAACCAGGCGGCGAAC
LOC_Os01g45320
OsAffx.23667.1.S1_at--775--5111Chr01:26050060..26050084 (25 bp)
GCACATGGACACCTACCTCAAGCAG
LOC_Os01g45320
OsAffx.23667.1.S1_at--6--3251Chr01:26050042..26050066 (25 bp)
CAAGCAGGCCGAGCAGTTCGAGAAG
LOC_Os01g45320
OsAffx.23667.1.S1_at--1113--1671Chr01:26049974..26049998 (25 bp)
AGCCGGATCAGGTGGTCGATCAAGA
LOC_Os01g45320
OsAffx.23667.1.S1_at--986--4631Chr01:26049828..26049852 (25 bp)
GCGTTCGTGCTCATGGCTAGTGTCC
LOC_Os01g45320
OsAffx.23667.1.S1_at--531--9471Chr01:26049818..26049842 (25 bp)
TCATGGCTAGTGTCCGGACGTCCGG
LOC_Os01g45320
OsAffx.23667.1.S1_at--292--7731Chr01:26049794..26049818 (25 bp)
GGTGGGACAGCGACCGCTACGACCT
LOC_Os01g45320
OsAffx.23667.1.S1_at--83--3631Chr01:26049778..26049802 (25 bp)
CTACGACCTCTACGAACAGTACTAC
LOC_Os01g45320
OsAffx.23667.1.S1_at--521--3451Chr01:26049762..26049786 (25 bp)
CAGTACTACAGGTTATTGCATGATC
LOC_Os01g45320
OsAffx.23667.1.S1_at--1040--51Chr01:26049748..26049772 (25 bp)
ATTGCATGATCACTTGCCTGTTGCG
LOC_Os01g45320
OsAffx.23667.1.S1_at--895--4471Chr01:26049733..26049757 (25 bp)
GCCTGTTGCGTCTAAACATCATGCA
LOC_Os01g45320
Target Sequence 
GGAGAATTTCAACCAGGCGGCGAACCCGACGGTGGCCATGCTCCTGGAGGAGCTGCGGCAGCTGCGGGGGCTCATGGAGA
GGCAGTACCTCTACAACAAGGAGGGCCGCCCCTACGCCGCCTCCTCGCTCGCCTCCCACGACCGCCAGCGCGTCGCCACC
AGGGGCCAAGCCGACGGCGTCCGGCTCTACACCACGCCGCACATGGACACCTACCTCAAGCAGGCCGAGCAGTTCGAGAA
GAACCCCGACGAGGCGCCGCCGCCCGCCACGAAGCACGTCCCGGAGCCGGATCAGGTGGTCGATCAAGAGCCGCCGGCGC
CGCCCGCCGAGGCCGACGTCGTCCCGGACGTGCCGCGAGACATGGCGGCGGGGGACAGGAGGACGCTGTCGGCGGCGCTG
CGGGTGGCGGCGGCGGTGCTGAGCCTGGCGGCGTTCGTGCTCATGGCTAGTGTCCGGACGTCCGGGTGGGACAGCGACCG
CTACGACCTCTACGAACAGTACTACAGGTTATTGCATGATCACTTGCCTGTTGCGTCTAAACATCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis