Browse Element(s) Details


OsAffx.23665.1.S1_at

Description tigr:9629.m04322
TID=OsAffx.23665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4527411/11Carbonic anhydrase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45234NANA1+25997317..25997937NA
LOC_Os01g45250Os.7206.1.S1_at10/111+26008419..26009760expressed protein
LOC_Os01g45260OsAffx.27648.1.S1_x_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45260OsAffx.27648.1.S1_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45290Os.33623.2.S1_at11/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45290Os.33623.1.S1_x_at6/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45310NANA1+26047920..26048645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015976biological_processcarbon utilization
GO:0005737cellular_componentcytoplasm
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23665.1.S1_at--278--6631Chr01:26019602..26019626 (25 bp)
GTTGGGCTCGGAATTTCGACAGGAT
LOC_Os01g45274
OsAffx.23665.1.S1_at--150--7591Chr01:26019605..26019629 (25 bp)
GGGCTCGGAATTTCGACAGGATACT
LOC_Os01g45274
OsAffx.23665.1.S1_at--122--5231Chr01:26019612..26019636 (25 bp)
GAATTTCGACAGGATACTCACAGCG
LOC_Os01g45274
OsAffx.23665.1.S1_at--895--5651Chr01:26019619..26019643 (25 bp)
GACAGGATACTCACAGCGAAATCAA
LOC_Os01g45274
OsAffx.23665.1.S1_at--456--4591Chr01:26019634..26019658 (25 bp)
GCGAAATCAATACTCTGCTATGGCA
LOC_Os01g45274
OsAffx.23665.1.S1_at--553--5591Chr01:26019636..26019660 (25 bp)
GAAATCAATACTCTGCTATGGCAAA
LOC_Os01g45274
OsAffx.23665.1.S1_at--630--3091Chr01:26019642..26019662 (21 bp)
AATACTCTGCTATGGCAAATGCTGT
LOC_Os01g45274
OsAffx.23665.1.S1_at--142--3711Chr01:26019651..26019734 (25 bp)
CTATGGCAAATGCTGTAGCTGCTGA
LOC_Os01g45274
OsAffx.23665.1.S1_at--952--8231Chr01:26019655..26019738 (25 bp)
GGCAAATGCTGTAGCTGCTGATAAA
LOC_Os01g45274
OsAffx.23665.1.S1_at--277--4731Chr01:26019721..26019745 (25 bp)
GCTGTAGCTGCTGATAAACGTGCCA
LOC_Os01g45274
OsAffx.23665.1.S1_at--1098--1591Chr01:26019726..26019750 (25 bp)
AGCTGCTGATAAACGTGCCATGTAT
LOC_Os01g45274
Target Sequence 
GTTGGGCTCGGAATTTCGACAGGATACTCACAGCGAAATCAATACTCTGCTATGGCAAATGCTGTAGCTGCTGATAAACG
TGCCATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis