Browse Element(s) Details


Os.7206.1.S1_at

Description gb:AK067056.1
DB_XREF= gi:32977074
TID=Os.7206.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004A09.25 (P0004A09.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088M21, full insert sequence.
FL= gb:AK067056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4525010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45210NANA1+25980786..25986881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45220OsAffx.21897.5.S1_x_at4/111+25987198..25990137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45234NANA1+25997317..25997937NA
LOC_Os01g45250Os.7206.1.S1_at10/111+26008419..26009760expressed protein
LOC_Os01g45260OsAffx.27648.1.S1_x_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45260OsAffx.27648.1.S1_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7206.1.S1_at--177--6991Chr01:26009214..26009238 (25 bp)
GTACCGCCAGGATCTCATGGGCATC
LOC_Os01g45250
Os.7206.1.S1_at--1026--7551Chr01:26009313..26009337 (25 bp)
GGGCGAATGACCACTTCAACTCAAA
LOC_Os01g45250
Os.7206.1.S1_at--945--191Chr01:26009354..26009378 (25 bp)
ATTTCGAGTTTGAATTCTCCGGGAT
LOC_Os01g45250
Os.7206.1.S1_at--1080--5191Chr01:26009365..26009389 (25 bp)
GAATTCTCCGGGATTTGAAGTTTCG
LOC_Os01g45250
Os.7206.1.S1_at--622--5431Chr01:26009389..26009413 (25 bp)
GAACCTTTGACTTGAAGCCTACTGC
LOC_Os01g45250
Os.7206.1.S1_at--920--6551Chr01:26009430..26009454 (25 bp)
GATTAGCGTAATCTATAGCTTTGCT
LOC_Os01g45250
Os.7206.1.S1_at--1042--6571Chr01:26009519..26009543 (25 bp)
GATTCGCTGAGGAATACAGCTCTGC
LOC_Os01g45250
Os.7206.1.S1_at--70--3971Chr01:26009548..26009572 (25 bp)
CGGTTTATTGCGAACGACATGTGAA
LOC_Os01g45250
Os.7206.1.S1_at--718--1351Chr01:26009627..26009651 (25 bp)
AGAGCTTCCATGTGATTATTTGTAC
LOC_Os01g45250
Os.7206.1.S1_at--762--4171Chr01:26009711..26009736 (25 bp)
CCCTTGTTTGCACATCTAACTACTG
LOC_Os01g45250
Os.7206.1.S1_at--123--6091NONE
GAGTAGTAGTGTTGCTTTTTCTGCA
NONE
Target Sequence 
GTACCGCCAGGATCTCATGGGCATCTTCGCCAACGTGAACGGCCTCAGCCGGACTCACCACCGCCCCTTCTGATCGCCGG
ACANANAGCCGTCACCGTCAGGGCGAATGACCACTTCAACTCAAAAAAGTGAGAAAGAGAGATTTCGAGTTTGAATTCTC
CGGGATTTGAAGTTTCGAACCTTTGACTTGAAGCCTACTGCANATTTGAAGTTTGTGTGATTAGCGTAATCTATAGCTTT
GCTATTGCACNGGGGGATTAATGAAGTCNAAATTGGAGGCGTGAAGTCAGAACANGGCGAAATGTGGGGGATTCGCTGAG
GAATACAGCTCTGCAAGTCGGTTTATTGCGAACGACATGTGAAGTTGTGAACGTGGTAGGGAATCACACACNGGGGAAGT
TGTGAGAGAAAAAAAAANGAAGAGCTTCCATGTGATTATTTGTACTTGTACATATGTGTATGTGTATTATTGGATATGTA
GATTGACNGGAGTCGTTTTTTTCCCCCTTGTTTGCACATCTAACTACTGGAGTAGTAGTGTTGCTTTTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis