Browse Element(s) Details


OsAffx.27648.1.S1_at

Description gb:NM_192259.1
DB_XREF= gi:34911601
GEN=P0004A09.26
TID=OsAffx.27648.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0004A09.26 (P0004A09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g452606/11hypothetical protein
LOC_Os06g154906/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45234NANA1+25997317..25997937NA
LOC_Os01g45250Os.7206.1.S1_at10/111+26008419..26009760expressed protein
LOC_Os01g45260OsAffx.27648.1.S1_x_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45260OsAffx.27648.1.S1_at6/111+26017187..26017654hypothetical protein
LOC_Os01g45274OsAffx.23665.1.S1_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45274Os.2329.1.S1_a_at11/111+26019575..26031937Carbonic anhydrase, chloroplast precursor, putative, expressed
LOC_Os01g45290Os.33623.2.S1_at11/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed
LOC_Os01g45290Os.33623.1.S1_x_at6/111+26035111..26043078retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27648.1.S1_at--542--9591Chr01:26017058..26017082 (25 bp)
TCATTCTCCGCACGCAAAGCCGTCA
NONE
OsAffx.27648.1.S1_at--194--4411Chr01:26017089..26017113 (25 bp)
GCCACATCGGCATTTCGGCGAACAC
NONE
OsAffx.27648.1.S1_at--1050--9272Chr06:8791262..8791283 (22 bp)
TCCTGGTGTCGGTCGTCTGCCTCGC
NONE
OsAffx.27648.1.S1_at--370--4671Chr01:26017153..26017177 (25 bp)
GCGGGCTGCAACGTCGTGACACGCT
NONE
OsAffx.27648.1.S1_at--32--7591Chr01:26017155..26017179 (25 bp)
GGGCTGCAACGTCGTGACACGCTCC
NONE
OsAffx.27648.1.S1_at--312--8412Chr06:8791356..8791380 (25 bp)
GGCCGGCGAGCAACTGGGACTGGTC
LOC_Os06g15490
OsAffx.27648.1.S1_at--53--4612Chr06:8791361..8791385 (25 bp)
GCGAGCAACTGGGACTGGTCGGACT
LOC_Os06g15490
OsAffx.27648.1.S1_at--790--5992Chr06:8791446..8791470 (25 bp)
GAGACGGGCTCGCCACCAAGCAGCT
LOC_Os06g15490
OsAffx.27648.1.S1_at--88--6212Chr06:8791631..8791655 (25 bp)
GAGGCAGACATGGTGTGTGCCCACA
LOC_Os06g15490
OsAffx.27648.1.S1_at--281--10552Chr06:8791694..8791718 (25 bp)
TTCATCTCCCCGAAAGAGCAGGTTG
LOC_Os06g15490
OsAffx.27648.1.S1_at--1053--4172Chr06:8791701..8791725 (25 bp)
CCCCGAAAGAGCAGGTTGATGCCAT
LOC_Os06g15490
Target Sequence 
TCATTCTCCGCACGCAAAGCCGTCACGTCCCGCCACATCGGCATTTCGGCGAACACCTCACGCGCGCGCTCCTGGTGTCG
GTCGTCTGCCTCGCGGCGGGCTGCAACGTCGTGACACGCTCCNNNNCCNNTGNCNGCGGCGAGCGGCCGGCGAGCAACTG
GGACTGGTCGGACTNTGACGCCGCATTCACNGAGGAGGCCGACGGGGCGATCGCCGCGCTGCAGGACACNGGCGGAGACG
GGCTCGCCACCAAGCAGCTCCTCGNGAGGTACCACNNNNNNNNNNNNNNNNACNCNATCCTNGCGCAATGGTACTTCGCG
CNCGCGGATCAGCAAAAGNCGACGAATCACCTCAGGAGAGCNGCATGGATGGCCCCGNGCTGCCTGCACATCGCCTTTGC
GCTCGCCTTNGTGCTCATCGAGATGGGCTCCTTCGANGAGGCAGACATGGTGTGTGCCCACANCCTCCTCGTGCCGGATC
TCACCNACCCNGNGCACAACTTCATCTCCCCGAAAGAGCAGGTTGATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis