Browse Element(s) Details


Os.45985.1.S1_at

Description gb:NM_192266.1
DB_XREF= gi:34911615
GEN=P0039G05.10
TID=Os.45985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039G05.10 (P0039G05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039G05.10 (P0039G05.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4536010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45320OsAffx.23667.1.S1_at11/111+26049703..26051472von Willebrand factor type A domain containing protein
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45985.1.S1_at--956--5731Chr01:26076634..26076658 (25 bp)
GACGGCGATCGCGATACCGTTCAAC
LOC_Os01g45360
Os.45985.1.S1_at--232--2031Chr01:26076359..26076383 (25 bp)
ACTACGGCCGCTACGAGCAGTACAG
LOC_Os01g45360
Os.45985.1.S1_at--333--1531NONE
AGCAGTACAGGTACGCCGTCGGAGT
NONE
Os.45985.1.S1_at--593--4491Chr01:26075665..26075689 (25 bp)
GCCGTCGGAGTGAACATCGTCGTCT
LOC_Os01g45360
Os.45985.1.S1_at--938--7171Chr01:26075644..26075668 (25 bp)
GTCTGCATCTACTCGATCGCGCAAG
LOC_Os01g45360
Os.45985.1.S1_at--845--8611Chr01:26075428..26075451 (24 bp)
TGGTGTTGGCGTATCTCCTCATGTC
LOC_Os01g45360
Os.45985.1.S1_at--772--1631Chr01:26075388..26075412 (25 bp)
AGCGTCCCGCAACGATCTGTGGATG
LOC_Os01g45360
Os.45985.1.S1_at--77--6411Chr01:26075375..26075399 (25 bp)
GATCTGTGGATGTCGAGCTTCGGCA
LOC_Os01g45360
Os.45985.1.S1_at--1042--5911Chr01:26075361..26075385 (25 bp)
GAGCTTCGGCAAGGATCCGTTCAAC
LOC_Os01g45360
Os.45985.1.S1_at--608--2471Chr01:26075327..26075351 (25 bp)
AACAGCGCGGTGTGGTTTTCCTTCA
LOC_Os01g45360
Os.45985.1.S1_at--386--6811Chr01:26075313..26075337 (25 bp)
GTTTTCCTTCATCGCGTTCATCGGA
LOC_Os01g45360
Target Sequence 
GACGGCGATCGCGATACCGTTCAACCCGGCCGAGGAGGCCATGACGTCGCCTCTGCGGATCGGCAACGGCAAGGCCGCGC
GGCTCGACCACCAGCACGGGCCCGTGGCAGGGGCGGCGGAGAACGGAGGGGACGTGCCGCCAGAGGTGGCGGCCGTGGCC
GCCGTCGGGGAGAGGAGGACGACGTCGGTGGCGCTGCGAGTGGCCACGGCGGTGCTCAGCCTGGTGTCCTTCGCGCTCAT
GGTCAGCGCGCGGACGTCCGGCTGGGCCGGCGACCACTACGGCCGCTACGAGCAGTACAGGTACGCCGTCGGAGTGAACA
TCGTCGTCTGCATCTACTCGATCGCGCAAGCGTTCGGCGAGATTCGCCGCCTGGTGTTGGCGTATCTCCTCATGTCGGCC
TCGTCGGCGGCAGCGTCCCGCAACGATCTGTGGATGTCGAGCTTCGGCAAGGATCCGTTCAACAAGAAGATCAACAGCGC
GGTGTGGTTTTCCTTCATCGCGTTCATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis