Browse Element(s) Details


OsAffx.11479.1.S1_at

Description tigr:9629.m04339
TID=OsAffx.11479.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4542011/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0009733biological_processresponse to auxin stimulus
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11479.1.S1_at--117--971Chr01:26098470..26098494 (25 bp)
AGGACCATCACGCTCGTGGTCGACA
LOC_Os01g45420
OsAffx.11479.1.S1_at--337--8591Chr01:26098486..26098510 (25 bp)
TGGTCGACAGCTGCGACTCGGTCGA
LOC_Os01g45420
OsAffx.11479.1.S1_at--304--2011Chr01:26098501..26098525 (25 bp)
ACTCGGTCGAGAACGTCAAGGCGAG
LOC_Os01g45420
OsAffx.11479.1.S1_at--214--4531Chr01:26098660..26098684 (25 bp)
GCCGCGGCATGAACGACATCAAGGT
LOC_Os01g45420
OsAffx.11479.1.S1_at--674--3211Chr01:26098679..26098703 (25 bp)
CAAGGTTAAGATGCTCACTGGCAAG
LOC_Os01g45420
OsAffx.11479.1.S1_at--564--6051Chr01:26098704..26098728 (25 bp)
GAGATTGACGTGGACATCGAGCCGA
LOC_Os01g45420
OsAffx.11479.1.S1_at--303--5671Chr01:26098716..26098740 (25 bp)
GACATCGAGCCGACGGACACTATGG
LOC_Os01g45420
OsAffx.11479.1.S1_at--961--4091Chr01:26098726..26098750 (25 bp)
CGACGGACACTATGGGCAGGATCAA
LOC_Os01g45420
OsAffx.11479.1.S1_at--1055--1071Chr01:26098771..26098795 (25 bp)
AGGGCAGGCTCGTCTACGGCGGGAA
LOC_Os01g45420
OsAffx.11479.1.S1_at--958--3251Chr01:26098797..26098821 (25 bp)
CAACTTGCCGACGATAAGACAGTGC
LOC_Os01g45420
OsAffx.11479.1.S1_at--739--5651Chr01:26098814..26098838 (25 bp)
GACAGTGCACGAGTACGATATCGAG
LOC_Os01g45420
Target Sequence 
AGGACCATCACGCTCGTGGTCGACAGCTGCGACTCGGTCGAGAACGTCAAGGCGAGGATCCACGACAGGGAGGGCGTCCC
GCCGCACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGG
AGTCGACGCTGCACCTCGTGCTCCGCCTCCGCCGCGGCATGAACGACATCAAGGTTAAGATGCTCACTGGCAAGGAGATT
GACGTGGACATCGAGCCGACGGACACTATGGGCAGGATCAAGGAGCGCATCGATGAGAGGGAGGGCAGGCTCGTCTACGG
CGGGAAGCAACTTGCCGACGATAAGACAGTGCACGAGTACGATATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis