Browse Element(s) Details


OsAffx.9247.1.S1_at

Description tigr:9629.m04342
TID=OsAffx.9247.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, AAA family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4545011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein
LOC_Os01g45490NANA1+26134229..26138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45500Os.45173.1.S1_x_at1/111+26138924..26140854retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9247.1.S1_at--26--5391Chr01:26116496..26116520 (25 bp)
GAAGCAACCCGCCTTCCGTGAATCG
LOC_Os01g45450
OsAffx.9247.1.S1_at--188--4211Chr01:26116506..26116526 (21 bp)
GCCTTCCGTGAATCGTAAGGTGACT
LOC_Os01g45450
OsAffx.9247.1.S1_at--1004--9771Chr01:26117268..26117290 (23 bp)
TAAGGTGACTTTGTCTGGGCTGCTC
LOC_Os01g45450
OsAffx.9247.1.S1_at--197--9711Chr01:26117289..26117313 (25 bp)
TCAACATGGTGGACGGCCTCTGGTC
LOC_Os01g45450
OsAffx.9247.1.S1_at--371--5071Chr01:26117316..26117340 (25 bp)
GCAGCGGCCACGAGCGGATCCTCAT
LOC_Os01g45450
OsAffx.9247.1.S1_at--895--7971Chr01:26117331..26117355 (25 bp)
GGATCCTCATCTTCACGACGACGCA
LOC_Os01g45450
OsAffx.9247.1.S1_at--102--7351Chr01:26117408..26117432 (25 bp)
GTGCACATGGGCTACCTCGGCTTCG
LOC_Os01g45450
OsAffx.9247.1.S1_at--367--4431Chr01:26117582..26117606 (25 bp)
GCCATCGAGATGGTCGCGAAACTTT
LOC_Os01g45450
OsAffx.9247.1.S1_at--972--9311Chr01:26117595..26117619 (25 bp)
TCGCGAAACTTTTGAGGGACAGGAA
LOC_Os01g45450
OsAffx.9247.1.S1_at--455--7111Chr01:26117651..26117675 (25 bp)
GTCAGCCAGAAGCTTCACGCGGGCA
LOC_Os01g45450
OsAffx.9247.1.S1_at--379--10851Chr01:26117769..26117793 (25 bp)
TTGGGATGGAGATCTCGCACGGACA
LOC_Os01g45450
Target Sequence 
GAAGCAACCCGCCTTCCGTGAATCGTAAGGTGACTTTGTCTGGGCTGCTCAACATGGTGGACGGCCTCTGGTCCAGCAGC
GGCCACGAGCGGATCCTCATCTTCACGACGACGCACGTGGACCGGCTCGACCAGGCGCTGCTCCGCCCAGGCCGGATGGA
CATGCACGTGCACATGGGCTACCTCGGCTTCGGCGCGTTCAGGGAGCTCGCCGCCACCTACCACGGCGTCGCCGGCGACG
ACCACCCGCTCTTCCCGGAGATCGAGGCGCTGCTGCGGGAGGTGGAGGTGGCGCCGGCCGAGGTCGCGGAGAGGCTGCTG
ATGACCGACGACGCCGGCGCAGCCATCGAGATGGTCGCGAAACTTTTGAGGGACAGGAAGGCCGGGACCGAGGAGGATGG
CGGCGGGTACGTCAGCCAGAAGCTTCACGCGGGCACGGGGCGTAGGCACCCGCGGGCGTCTCGTCGAGGAGGAGGAGGAG
GCGCCGTGGTTGCGACGACGACGAGGCGGGGAGTGTTCGGCGATGAAATTGGGATGGAGATCTCGCACGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis