Browse Element(s) Details


Os.10486.1.S1_at

Description gb:AK105174.1
DB_XREF= gi:32990383
TID=Os.10486.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039G05.22 (P0039G05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H01, full insert sequence.
FL= gb:AK105174.1 gb:AK071521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g454705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein
LOC_Os01g45490NANA1+26134229..26138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45500Os.45173.1.S1_x_at1/111+26138924..26140854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45510OsAffx.23670.1.S1_x_at11/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45510OsAffx.27391.1.S1_x_at2/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10486.1.S1_at--871--8911Chr01:26128039..26128063 (25 bp)
TGAGCCTTATCCCAGGGTCAGGACA
NONE
Os.10486.1.S1_at--342--5291Chr01:26127990..26128014 (25 bp)
GAATGGCTTCTCTGAAGGCCGTGAA
NONE
Os.10486.1.S1_at--237--2951Chr01:26127976..26128000 (25 bp)
AAGGCCGTGAAACCTGCCGGACTTG
LOC_Os01g45470
Os.10486.1.S1_at--91--5691Chr01:26127957..26127981 (25 bp)
GACTTGCCAAGGAGCCGGCTGCCAA
LOC_Os01g45470
Os.10486.1.S1_at--761--1671Chr01:26127945..26127969 (25 bp)
AGCCGGCTGCCAAGCTCAGTGAGAC
LOC_Os01g45470
Os.10486.1.S1_at--1062--1111Chr01:26127668..26127692 (25 bp)
AGTACGAGGGTCTCCATCTTACGCT
LOC_Os01g45470
Os.10486.1.S1_at--951--3551Chr01:26127654..26127678 (25 bp)
CATCTTACGCTATGCTATGGGATTA
LOC_Os01g45470
Os.10486.1.S1_at--1124--7091Chr01:26127604..26127628 (25 bp)
GTCACCCCGTGATGTCTTGATCATG
NONE
Os.10486.1.S1_at--997--7131Chr01:26127591..26127615 (25 bp)
GTCTTGATCATGTAGCAGCAACCTT
NONE
Os.10486.1.S1_at--630--1471Chr01:26127575..26127599 (25 bp)
AGCAACCTTAGTCAAGCTGGTCTTG
NONE
Os.10486.1.S1_at--268--9871NONE
TACAGTTGGTGACATCCGCTTCATA
NONE
Target Sequence 
TGAGCCTTATCCCAGGGTCAGGACAGAACAGAGCAGAGAAGCATCAGAAGAATGGCTTCTCTGAAGGCCGTGAAACCTGC
CGGACTTGCCAAGGAGCCGGCTGCCAAGCTCAGTGAGACGGCGACGAAGCCCGCGGCCGCCAAGGGCGGCGTCAAGAAGG
CTGAGCAGAAGCCCCGGGAGCCCAAGAAGAAGGTGAAGAGCAGCAAGCCGGCGGCAGCCAAAAACTGATAGTGGCAACAG
GAGAGATGGAGATAGTACGAGGGTCTCCATCTTACGCTATGCTATGGGATTATGAATCCCGTCTGTCCCTTCCTCTCGTC
ACCCCGTGATGTCTTGATCATGTAGCAGCAACCTTAGTCAAGCTGGTCTTGACGGTGTGTGCAGCCCATGTGATGAATAT
TACAAATAAGATGGTACAGTTGGTGACATCCGCTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis