Browse Element(s) Details


Os.17986.1.S1_s_at

Description gb:C96828
DB_XREF= gi:3759129
DB_XREF=C96828
CLONE=C11605_2Z
TID=Os.17986.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039G05.17 (P0039G05.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4543011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17986.1.S1_s_at--411--9551Chr01:26102704..26102728 (25 bp)
TCTTCTTCGACCACAAGTTGCTGGA
LOC_Os01g45430
Os.17986.1.S1_s_at--45--2231Chr01:26102716..26102740 (25 bp)
ACAAGTTGCTGGAGAACGGCTGCAC
LOC_Os01g45430
Os.17986.1.S1_s_at--846--2571Chr01:26102730..26102754 (25 bp)
AACGGCTGCACGGTGGCTGGCTACA
LOC_Os01g45430
Os.17986.1.S1_s_at--780--9031Chr01:26102736..26102760 (25 bp)
TGCACGGTGGCTGGCTACAACATCC
LOC_Os01g45430
Os.17986.1.S1_s_at--349--8311Chr01:26102748..26102772 (25 bp)
GGCTACAACATCCAGGACGGCTCGA
LOC_Os01g45430
Os.17986.1.S1_s_at--1022--951Chr01:26102761..26102785 (25 bp)
AGGACGGCTCGACGCTGAGCCTCTA
LOC_Os01g45430
Os.17986.1.S1_s_at--130--9251Chr01:26102794..26102818 (25 bp)
TCCTTCCAGGCAGCATGAACATCAA
LOC_Os01g45430
Os.17986.1.S1_s_at--293--10671Chr01:26102797..26102821 (25 bp)
TTCCAGGCAGCATGAACATCAAGGT
LOC_Os01g45430
Os.17986.1.S1_s_at--1053--5591Chr01:26102956..26102980 (25 bp)
GACAAGGCGGCCCACGAGTACAATA
LOC_Os01g45430
Os.17986.1.S1_s_at--109--891Chr01:26102960..26102984 (25 bp)
AGGCGGCCCACGAGTACAATATCGA
LOC_Os01g45430
Os.17986.1.S1_s_at--935--751Chr01:26102972..26102996 (25 bp)
AGTACAATATCGAGGCCGGATCCGT
LOC_Os01g45430
Target Sequence 
TCTTCTTCGACCACAAGTTGCTGGAGAACGGCTGCACGGTGGCTGGCTACAACATCCAGGACGGCTCGACGCTGAGCCTC
TATCTCCGCCTCCTTCCAGGCAGCATGAACATCAAGGTGTTTGNCCTGGGNATCGAGCCGACGNACACCGGGGCNATGAT
CAGGGCGCGNATCGAGGAGGAGGACAGGNAAATAGGGCAGCTNATCTACAAAGGGGTGCTGGTNACCGACGACAAGGCGG
CCCACGAGTACAATATCGAGGCCGGATCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17986.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis