Browse Element(s) Details


Os.30916.1.S1_at

Description gb:AK108130.1
DB_XREF= gi:32993339
TID=Os.30916.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase -like (P0039G05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D09, full insert sequence.
FL= gb:AK108130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4538011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45330NANA1+26053934..26061761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45340NANA1+26068882..26069310hypothetical protein
LOC_Os01g45350Os.34863.1.S1_at7/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45350OsAffx.27499.3.S1_x_at1/111+26072100..26074651limonene cyclase like protein, putative, expressed
LOC_Os01g45360Os.45985.1.S1_at10/111+26075057..26077312expressed protein
LOC_Os01g45370Os.35811.1.S1_at11/111+26079146..26082617radical SAM enzyme, Cfr family protein, expressed
LOC_Os01g45380Os.30916.1.S1_at11/111+26084643..26089035protein kinase, putative, expressed
LOC_Os01g45390OsAffx.2237.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_s_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45390Os.25120.1.S1_at11/111+26089384..26093287HD domain containing protein, expressed
LOC_Os01g45400OsAffx.11477.1.S1_x_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45400OsAffx.11477.1.S1_at11/111+26094018..26094482ubiquitin family protein, putative
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30916.1.S1_at--298--331Chr01:26088334..26088358 (25 bp)
ATACTGCTGCGATATGCCGTATCCT
LOC_Os01g45380
Os.30916.1.S1_at--249--4511Chr01:26088349..26088373 (25 bp)
GCCGTATCCTGATCTGAGTTTCTCA
LOC_Os01g45380
Os.30916.1.S1_at--1120--10311Chr01:26088367..26088391 (25 bp)
TTTCTCAGAGGTCACTTCAGCTGTT
LOC_Os01g45380
Os.30916.1.S1_at--1120--2491Chr01:26088514..26088538 (25 bp)
AACTTGAGGCCTGAGATACCGCGCT
LOC_Os01g45380
Os.30916.1.S1_at--119--10011Chr01:26088546..26088570 (25 bp)
TAGCTCCTTGGCCAACGTGATGAAG
LOC_Os01g45380
Os.30916.1.S1_at--888--1691Chr01:26088677..26088701 (25 bp)
AGCCACAGGGATGCTTCTCGTGCTT
LOC_Os01g45380
Os.30916.1.S1_at--567--891Chr01:26088714..26088738 (25 bp)
AGGCCCCTGACGAACTTGATCTGAT
LOC_Os01g45380
Os.30916.1.S1_at--324--3051Chr01:26088782..26088806 (25 bp)
AATCGCATTCGCTATGGCTAATTTG
LOC_Os01g45380
Os.30916.1.S1_at--767--6271Chr01:26088822..26088846 (25 bp)
GATGTAAATGCCTTAACGGTCCAGC
LOC_Os01g45380
Os.30916.1.S1_at--333--10551Chr01:26088855..26088879 (25 bp)
TTCATCGTCGTATGATCGCTGCGAA
LOC_Os01g45380
Os.30916.1.S1_at--999--4571Chr01:26088875..26088899 (25 bp)
GCGAATCCTAATGCTTGGCCTATGA
LOC_Os01g45380
Target Sequence 
ATACTGCTGCGATATGCCGTATCCTGATCTGAGTTTCTCAGAGGTCACTTCAGCTGTTGTTCGTCAGAACTTGAGGCCTG
AGATACCGCGCTGCTGCCCTAGCTCCTTGGCCAACGTGATGAAGCGCTGCTGGGACGCGAACCCGGACAAGCGGCCGGCG
ATGGCGGAGGTGGTGTCCATGCTGGAGGCGATCGACACGTCCAAGGGCGGTGGCATGATCCCGACCGACCAGCCACAGGG
ATGCTTCTCGTGCTTCGGTCGGCACCGAGGCCCCTGACGAACTTGATCTGATGGCGTCACTGATAATTTGTTATCGCTAT
ATCTCAGTGTAATCTAATCGCATTCGCTATGGCTAATTTGAGGAGCTGTGTGATTGATGTAAATGCCTTAACGGTCCAGC
ACCTCAGCTTCATCGTCGTATGATCGCTGCGAATCCTAATGCTTGGCCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis