Browse Element(s) Details


OsAffx.23670.1.S1_x_at

Description gb:NM_192281.1
DB_XREF= gi:34911645
GEN=P0039G05.26
TID=OsAffx.23670.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0039G05.26 (P0039G05.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4551011/11uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os05g501602/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os01g592001/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein
LOC_Os01g45490NANA1+26134229..26138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45500Os.45173.1.S1_x_at1/111+26138924..26140854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45510OsAffx.23670.1.S1_x_at11/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45510OsAffx.27391.1.S1_x_at2/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45520OsAffx.23671.2.S1_x_at11/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45520OsAffx.21804.2.S1_x_at1/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45530Os.7466.1.S1_at11/111+26168403..26170345Single-strand binding protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23670.1.S1_x_at--46--1911Chr01:26153084..26153108 (25 bp)
ACGTCCACCTCGCGTTCCAGGTGGA
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--463--4171Chr01:26153019..26153043 (25 bp)
CCCACGGCGTCGCTGGTGCGCGAGA
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--392--4151Chr01:26152836..26152860 (25 bp)
CGCGCGTACTGCAACGGCAGGAGCT
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--68--8091Chr01:26152753..26152777 (25 bp)
GGAGCCCGTGTCCATGGGCGCGGGT
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--367--791Chr01:26152740..26152764 (25 bp)
ATGGGCGCGGGTGTCATACCGGCGG
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--766--4671Chr01:26152734..26152758 (25 bp)
GCGGGTGTCATACCGGCGGCGTGCG
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--213--5772Chr05:28660564..28660588 (25 bp)
GACGTCATGTACATGCGCGCGCGGT
LOC_Os05g50160
OsAffx.23670.1.S1_x_at--660--9372Chr01:34529166..34529185 (20 bp)
TCGAGCGCGTCGTTGGCTCCCGCGA
LOC_Os01g59200
OsAffx.23670.1.S1_x_at--499--10851Chr01:26152658..26152682 (25 bp)
TTGGCTCCCGCGACTCCGAGGCGTT
LOC_Os01g45510
OsAffx.23670.1.S1_x_at--681--10572Chr05:28660508..28660528 (21 bp)
TTCTACATGATGAACCCGGACTGCG
LOC_Os05g50160
OsAffx.23670.1.S1_x_at--807--711Chr01:26152629..26152653 (25 bp)
ATGATGAACCCGGACTGCGGCGGCA
LOC_Os01g45510
Target Sequence 
ACGTCCACCTCGCGTTCCAGGTGGACCCGCGCGCGTGCCCCGCGCTGCTCCTGGAGCTGGCCGCGCCCACGGCGTCGCTG
GTGCGCGAGATGGCCTCGGGCCTCGTGCGCATCGCGCTCGAGTGCGAGCGCGCCAAGGGCGGCGGCGCCTGCGCGTTCCC
CACCGCCGCCGCGGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGCGCCGGCGGCAGGAAGCTGGTGGAGGAGA
CGGTGTGGCGCGCGTACTGCAACGGCAGGAGCTGCGGGTACGCGGTGCGGCGCGAGTGCGGCGCCGCGGACTGGCGCGTG
CTGCGCGCGCTGGAGCCCGTGTCCATGGGCGCGGGTGTCATACCGGCGGCGTGCGGCGGCGGGGAGGGCGACGTCATGTA
CATGCGCGCGCGGTTCGAGCGCGTCGTTGGCTCCCGCGACTCCGAGGCGTTCTACATGATGAACCCGGACTGCGGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23670.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis