Browse Element(s) Details


OsAffx.23671.2.S1_x_at

Description tigr:9629.m04349
TID=OsAffx.23671.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4552011/11D-mannose binding lectin family protein
LOC_Os05g074501/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45490NANA1+26134229..26138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45500Os.45173.1.S1_x_at1/111+26138924..26140854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45510OsAffx.23670.1.S1_x_at11/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45510OsAffx.27391.1.S1_x_at2/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45520OsAffx.23671.2.S1_x_at11/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45520OsAffx.21804.2.S1_x_at1/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45530Os.7466.1.S1_at11/111+26168403..26170345Single-strand binding protein family protein, expressed
LOC_Os01g45540NANA1+26185984..26186496hypothetical protein
LOC_Os01g45550Os.33170.1.S1_x_at11/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45550Os.33170.2.S1_at10/111+26190565..26195111auxin efflux carrier protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23671.2.S1_x_at--801--5011Chr01:26166266..26166290 (25 bp)
GCAGGAGCCTCATCATACACTGTGA
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--901--5271Chr01:26166303..26166327 (25 bp)
GAATGTACTCCTAGGTGCTGATTTC
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--612--10311Chr01:26166324..26166348 (25 bp)
TTTCATGCCAAAGATCGCGGATTTT
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--767--10671Chr01:26166353..26166377 (25 bp)
TTGCCAAGCTCCTCGGAAGGGATTT
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--228--3332Chr01:26166405..26166429 (25 bp)
CACTATAGGGTATCTTGCCCCAGAA
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--788--7951Chr01:26166431..26166455 (25 bp)
GGATAAGCGGCACAGCTATCACCAC
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--857--5951Chr01:26166538..26166562 (25 bp)
GAGCAAGGTGCAGGGACATTCTTCC
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--916--2071Chr01:26166553..26166577 (25 bp)
ACATTCTTCCCAGTGCTAGTGGCGA
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--1156--4851Chr01:26166567..26166591 (25 bp)
GCTAGTGGCGATGAGACTCCCTGAA
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--1024--7911Chr01:26166739..26166763 (25 bp)
GGATTGGTCGATGTCAGCTTTCCTC
LOC_Os01g45520
OsAffx.23671.2.S1_x_at--498--8591Chr01:26166772..26166796 (25 bp)
TGGTATCTACATGTTCTTGCCCAGC
LOC_Os01g45520
Target Sequence 
GCAGGAGCCTCATCATACACTGTGATATAAAGCCAGAGAATGTACTCCTAGGTGCTGATTTCATGCCAAAGATCGCGGAT
TTTGGACTTGCCAAGCTCCTCGGAAGGGATTTCAGCAGAGTTTTGACAACCATGAGAGGCACTATAGGGTATCTTGCCCC
AGAATGGATAAGCGGCACAGCTATCACCACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTTTTCGAGATCATATCAG
GAAACAGAAATGCAGATTGGCATCGGCAAGGTGAGCAAGGTGCAGGGACATTCTTCCCAGTGCTAGTGGCGATGAGACTC
CCTGAAGGGAAGATTCAAGACTTGCTAGGTTCAGAACTAAGTGCAGATGCTAACTTAGAAGAGGTGGAGAGGGCTTGCAA
GGTGGCTTGCTGGTGCATACAAGATGATGAGAACACAAGACCAACGATGGGAGAGATTGTCCAGATTCTAGAAGGATTGG
TCGATGTCAGCTTTCCTCCTGTCCTTTGGTATCTACATGTTCTTGCCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23671.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis