Browse Element(s) Details


Os.33170.1.S1_x_at

Description gb:AK101504.1
DB_XREF= gi:32986713
TID=Os.33170.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative efflux carrier, pin3 (P0510C12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044E23, full insert sequence.
FL= gb:AK101504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4555011/11auxin efflux carrier protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45520OsAffx.23671.2.S1_x_at11/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45520OsAffx.21804.2.S1_x_at1/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45530Os.7466.1.S1_at11/111+26168403..26170345Single-strand binding protein family protein, expressed
LOC_Os01g45540NANA1+26185984..26186496hypothetical protein
LOC_Os01g45550Os.33170.1.S1_x_at11/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45550Os.33170.2.S1_at10/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45559NANA1+26195673..26196175NA
LOC_Os01g45570Os.8170.1.S1_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45570Os.8170.2.S1_x_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45580NANA1+26216076..26219312transposon protein, putative, unclassified
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009640biological_processphotomorphogenesis
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009925cellular_componentbasal plasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016020cellular_componentmembrane
GO:0016328cellular_componentlateral plasma membrane
GO:0045177cellular_componentapical part of cell
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33170.1.S1_x_at--174--8011Chr01:26193224..26193245 (22 bp)
GGATGGCCATGTTTAGCCTGGGATT
LOC_Os01g45550
Os.33170.1.S1_x_at--1076--8631Chr01:26193381..26193403 (23 bp)
TGGGATTGTTCATGGCGCTGCAGCC
LOC_Os01g45550
Os.33170.1.S1_x_at--817--3391Chr01:26193404..26193428 (25 bp)
CAGCATCATCGCGTGTGGCAAATCA
LOC_Os01g45550
Os.33170.1.S1_x_at--24--2331Chr01:26194668..26194692 (25 bp)
AAAGAATACAATGTCCACCCGGCCA
LOC_Os01g45550
Os.33170.1.S1_x_at--954--8431Chr01:26194688..26194802 (25 bp)
GGCCATCCTGAGCACAGCGGTAATT
LOC_Os01g45550
Os.33170.1.S1_x_at--1058--4831Chr01:26194811..26194835 (25 bp)
GCTAATAGCTCTTCCAATCACATTG
LOC_Os01g45550
Os.33170.1.S1_x_at--822--71Chr01:26194832..26194856 (25 bp)
ATTGCTGTACTACATCCTTCTTGGA
LOC_Os01g45550
Os.33170.1.S1_x_at--105--5571Chr01:26194867..26194891 (25 bp)
GAAAGCTTATGGACGCTCTCACATA
LOC_Os01g45550
Os.33170.1.S1_x_at--901--2411Chr01:26194923..26194947 (25 bp)
AAAAAAGCGATCCTGTCCATCTCAA
LOC_Os01g45550
Os.33170.1.S1_x_at--825--8811Chr01:26194973..26194997 (25 bp)
TGTTGTCGGACATTGCCCATGATGA
LOC_Os01g45550
Os.33170.1.S1_x_at--1103--231Chr01:26195024..26195048 (25 bp)
ATATATCTCTGCGACATTTGTACAA
LOC_Os01g45550
Target Sequence 
GGATGGCCATGTTTAGCCTGGGATTGTTCATGGCGCTGCAGCCCAGCATCATCGCGTGTGGCAAATCAGCCGCCGTCGTC
TCCATGGCCGTCCGCTTCCTCGCGGGCCCTGCCGTCATGGCCGCCGCGTCAATCGCCATCGGACTCCGCGGGACGCTCCT
GCACGTCGCCATTGTTCAGGNNNNTNNNNNNCAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGG
CCATCCTGAGCACAGCGGTAATTTTTGGCATGCTAATAGCTCTTCCAATCACATTGCTGTACTACATCCTTCTTGGACTA
TGATCAAGAAAGCTTATGGACGCTCTCACATAAAACGGAAGAAATGGGGGCAAAGAGAGAGAAAAAAAAGCGATCCTGTC
CATCTCAAACAGCGTATGCTTATATGTATAGCCTGTTGTCGGACATTGCCCATGATGACAAGACAACGAAGTTGTTACAG
AGCTATATATCTCTGCGACATTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33170.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis