Browse Element(s) Details


Os.8170.2.S1_x_at

Description gb:NM_192290.1
DB_XREF= gi:34911663
GEN=P0510C12.22
TID=Os.8170.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8170 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative homeodomain-leucine zipper (P0510C12.22), mRNA.
PROD=putative homeodomain-leucine zipper
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4557010/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45540NANA1+26185984..26186496hypothetical protein
LOC_Os01g45550Os.33170.1.S1_x_at11/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45550Os.33170.2.S1_at10/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45559NANA1+26195673..26196175NA
LOC_Os01g45570Os.8170.1.S1_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45570Os.8170.2.S1_x_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45580NANA1+26216076..26219312transposon protein, putative, unclassified
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8170.2.S1_x_at--91--3951Chr01:26210078..26210102 (25 bp)
CGGCTGCAACATGAGGGACCTGGAC
LOC_Os01g45570
Os.8170.2.S1_x_at--109--8531Chr01:26210058..26210082 (25 bp)
TGGACATCAACCAGCCGGCGAGCGG
LOC_Os01g45570
Os.8170.2.S1_x_at--458--1511Chr01:26209932..26209956 (25 bp)
AGCAGTCCCGCCTCCTCGAGGAGAG
LOC_Os01g45570
Os.8170.2.S1_x_at--236--9391Chr01:26209917..26209941 (25 bp)
TCGAGGAGAGCTTCCGCCTCAACCA
LOC_Os01g45570
Os.8170.2.S1_x_at--556--9951NONE
TACCCTCACGCCGAAGCAAAAGGAG
NONE
Os.8170.2.S1_x_at--268--5131Chr01:26208936..26208960 (25 bp)
GCAAAAGGAGGCCTTGGCGATCAAA
LOC_Os01g45570
Os.8170.2.S1_x_at--663--4431Chr01:26208926..26208950 (25 bp)
GCCTTGGCGATCAAACTGAAGCTGC
LOC_Os01g45570
Os.8170.2.S1_x_at--434--4051Chr01:26208919..26208943 (25 bp)
CGATCAAACTGAAGCTGCGGCCGAG
LOC_Os01g45570
Os.8170.2.S1_x_at--642--7491Chr01:26208890..26208914 (25 bp)
GTGGAGGTCTGGTTTCAGAACCGTA
LOC_Os01g45570
Os.8170.2.S1_x_at--1108--10291Chr01:26208882..26208902 (21 bp)
TTTCAGAACCGTAGGGCAAGGACGA
LOC_Os01g45570
Os.8170.2.S1_x_at--442--1131Chr01:26207701..26207725 (25 bp)
AGTGCGAGTACCTGAAGCGCTGCTT
LOC_Os01g45570
Target Sequence 
CGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGG
AGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTC
CTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCC
GAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGA
AGCGCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8170.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis