Browse Element(s) Details


Os.38774.1.S1_s_at

Description gb:BU673036
DB_XREF= gi:23513212
DB_XREF=NL_9_94
CLONE=NL_9_94
TID=Os.38774.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38774 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181401.1 (A.thaliana) putative phospholipid cytidylyltransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0305011/11phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os12g0282011/11Cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein
LOC_Os11g03050Os.38774.1.S1_s_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050OsAffx.30790.1.S1_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050Os.33623.1.S1_x_at2/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03060Os.34563.1.S1_at11/1111+1077105..1081413SNF7 family protein, expressed
LOC_Os11g03070Os.53465.1.S1_at1/1111+1084636..1087189Sodium/hydrogen exchanger family protein
LOC_Os11g03080OsAffx.6977.1.S1_at11/1111+1088498..1089132hypothetical protein
LOC_Os11g03090OsAffx.22492.1.S1_x_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03090OsAffx.22492.1.S1_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38774.1.S1_s_at--538--572Chr12:1005566..1005590 (25 bp)
ATCCATATGCTGTTCCAAGGGCTAT
LOC_Os12g02820
Os.38774.1.S1_s_at--564--9212Chr12:1005553..1005577 (25 bp)
TCCAAGGGCTATGGGCATCTACCGT
LOC_Os12g02820
Os.38774.1.S1_s_at--852--1192Chr12:1005478..1005502 (25 bp)
AGTTGCTAACCATGAAGCCTACCAG
LOC_Os12g02820
Os.38774.1.S1_s_at--204--5412Chr12:1005082..1005489 (25 bp)
GAAGCCTACCAGAAACGGAACGAGA
LOC_Os12g02820
Os.38774.1.S1_s_at--650--7053Chr12:1005002..1005026 (25 bp)
GTAACTTAGGAACAGGTCTTGCATT
LOC_Os12g02820
Os.38774.1.S1_s_at--781--7813Chr12:1004988..1005012 (25 bp)
GGTCTTGCATTAATGCTATTGCCCA
LOC_Os12g02820
Os.38774.1.S1_s_at--862--4872Chr12:1004974..1004998 (25 bp)
GCTATTGCCCAGAAGTTTAGTTCAC
LOC_Os12g02820
Os.38774.1.S1_s_at--128--10352Chr12:1004959..1004983 (25 bp)
TTTAGTTCACAACCTTCTGGCACAA
LOC_Os12g02820
Os.38774.1.S1_s_at--1123--1732Chr12:1004948..1004972 (25 bp)
ACCTTCTGGCACAAATGCAGCGGTT
LOC_Os12g02820
Os.38774.1.S1_s_at--1036--9032Chr12:1004933..1004957 (25 bp)
TGCAGCGGTTAGATGATCCACAATT
LOC_Os12g02820
Os.38774.1.S1_s_at--108--7552Chr12:1004790..1004814 (25 bp)
GTGGCTGCCAATACCAGCTGTGTTA
LOC_Os12g02820
Target Sequence 
ATCCATATGCTGTTCCAAGGGCTATGGGCATCTACCGTAGACTGGAGAGCCCTTTNNACATCACTACTAGTACTATCATA
AGGAGGATAGTTGCTAACCATGAAGCCTACCAGAAACGGAACGAGAAGAAAGAAGCCAGTGAGAAGAAGTACTACGACAG
TAAAAGCTTTGTCAATGGAGAGTAACTTAGGAACAGGTCTTGCATTAATGCTATTGCCCAGAAGTTTAGTTCACAACCTT
CTGGCACAAATGCAGCGGTTAGATGATCCACAATTTTACAGTCTTGTGGTAACTACTCTCATGTTGCTGATATAGCTCAG
GAAACTTCAGATGCAACCCTGATGATGGTGCTGACTTGGGTGACGCTGGAGACCCTATTTTCCTGTATATGGGGCTTTGT
GGCTGCCAATACCAGCTGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38774.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis