Browse Element(s) Details


Os.38171.1.S1_at

Description gb:AK107581.1
DB_XREF= gi:32992790
TID=Os.38171.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1212_B09.20 (OJ1212_B09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E03, full insert sequence.
FL= gb:AK107581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g029643/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02920NANA11+1007611..1009010hypothetical protein
LOC_Os11g02930OsAffx.30787.3.S1_x_at11/1111+1010286..1011921hypothetical protein
LOC_Os11g02940OsAffx.18643.1.S1_at11/1111+1015779..1016123hypothetical protein
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38171.1.S1_at--289--1932Chr04:5708540..5708564 (25 bp)
ACGGAGCCGAGCAGCGCGAACGACC
NONE
Os.38171.1.S1_at--286--8791Chr01:805491..805515 (25 bp)
TGTTCAGCCGGTCGCGCTTCACGAT
NONE
Os.38171.1.S1_at--139--4911Chr01:805476..805500 (25 bp)
GCTTCACGATGTTGTCCTTGAGGAT
NONE
Os.38171.1.S1_at--634--8032Chr09:926334..926394 (25 bp)
GGAGTTGACCTCGATCTCGATGACG
NONE
Os.38171.1.S1_at--21--3431Chr01:805299..805323 (25 bp)
CAGACAGGGCTGAGGCACCGCCGCA
NONE
Os.38171.1.S1_at--767--7951Chr01:805157..805181 (25 bp)
GGATCATAACTGCTTCCGATAGTGG
NONE
Os.38171.1.S1_at--963--192Chr11:1029796..1029819 (24 bp)
ATTTGGAGCAAACCCGCGGCAAAAT
LOC_Os11g02964
Os.38171.1.S1_at--1096--2592Chr11:1029805..1030161 (25 bp)
AACCCGCGGCAAAATCAGTTTTATG
LOC_Os11g02964
Os.38171.1.S1_at--136--2271Chr01:805061..805085 (25 bp)
AAATCAGTTTTATGTGTTTCTCTTT
NONE
Os.38171.1.S1_at--989--6831Chr01:805046..805070 (25 bp)
GTTTCTCTTTTTCAGGCACAATAGA
NONE
Os.38171.1.S1_at--531--2272Chr11:1029864..1029888 (25 bp)
AAATCTGACAGGGTGGACCTATAAA
LOC_Os11g02964
Target Sequence 
ACGGAGCCGAGCAGCGCGAACGACCCGGCCGTCGTGTTCAGCCGGTCGCGCTTCACGATGTTGTCCTTGAGGATGGGGAC
GCCGTGGAGCGGCCCGCAGTAGCTGTGGCCAGAGGCGTGCTCGGTGTCGGCGCGCGCCGGCTGCTGGAGCGCGTCGGAGT
TGACCTCGATCTCGATGACGGCGTGGAGAAGCGCGTTGAGGCGGGTGATCTTGCCCTGGGGACGAGCAGACAGGGCTGAG
GCACCGCCGCACCGACGACGTCGTCGGCCGTGGCGGGCGCCGGGATCTGCTGTGGAGAAGCTGCGATGACTGGAGAGATT
GGATCGGTATGTTCAGGAGTAAGGAGATGGGTTTTGTTTTCTCTATTAGGATCATAACTGCTTCCGATAGTGGAGAAGAA
AACCCGGCAAATTGAGGGAGGAAAAAAGCGTACAAACACAAAAATTTGGAGCAAACCCGCGGCAAAATCAGTTTTATGTG
TTTCTCTTTTTCAGGCACAATAGAACTAGATTGATGGAAATCTGACAGGGTGGACCTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis