Browse Element(s) Details


OsAffx.23089.1.S1_x_at

Description tigr:9629.m00161
TID=OsAffx.23089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0249010/11hypothetical protein
LOC_Os11g029644/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein
LOC_Os01g02480NANA1+797700..798456retrotransposon, putative, centromere-specific
LOC_Os01g02490OsAffx.23089.1.S1_x_at10/111+801325..802501hypothetical protein
LOC_Os01g02500Os.38171.2.S1_at11/111+804652..806523amidase family protein, putative
LOC_Os01g02510NANA1+814344..814970retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02520NANA1+818146..820809retrotransposon protein, putative, unclassified
LOC_Os01g02530NANA1+821426..827580retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23089.1.S1_x_at--488--7271Chr01:802447..802471 (25 bp)
GTGCCTGCTTACGAGATTGTAAAGA
LOC_Os01g02490
OsAffx.23089.1.S1_x_at--964--6591Chr01:802433..802457 (25 bp)
GATTGTAAAGATGGAACCACAGGAG
LOC_Os01g02490
OsAffx.23089.1.S1_x_at--956--2311Chr01:802427..802451 (25 bp)
AAAGATGGAACCACAGGAGAAGAAC
LOC_Os01g02490
OsAffx.23089.1.S1_x_at--786--5471Chr01:802406..802430 (25 bp)
GAACTCACAGAGCACATCACTTGGT
LOC_Os01g02490
OsAffx.23089.1.S1_x_at--737--3311Chr01:802039..802413 (25 bp)
CACTTGGTGCAAGGAGTAGTAATCA
LOC_Os01g02490
OsAffx.23089.1.S1_x_at--962--3591NONE
CTTGGTGCAAGGAGTAGTAATCATT
NONE
OsAffx.23089.1.S1_x_at--1155--8992Chr11:1034770..1034790 (21 bp)
TGCAAGGAGTAGTAATCATTTATTC
LOC_Os11g02964
OsAffx.23089.1.S1_x_at--359--3072Chr11:1034779..1034803 (25 bp)
AATCATTTATTCTTCTATATGGTGG
LOC_Os11g02964
OsAffx.23089.1.S1_x_at--458--10412Chr11:1034785..1034919 (25 bp)
TTATTCTTCTATATGGTGGTTTGCA
LOC_Os11g02964
OsAffx.23089.1.S1_x_at--889--112Chr11:1034787..1035210 (25 bp)
ATTCTTCTATATGGTGGTTTGCAAG
LOC_Os11g02964
OsAffx.23089.1.S1_x_at--1089--6311Chr01:801573..801597 (25 bp)
GATGAATGGGACACTACCACACTGG
LOC_Os01g02490
Target Sequence 
GTGCCTGCTTACGAGATTGTAAAGATGGAACCACAGGAGAAGAACTCACAGAGCACATCACTTGGTGCAAGGAGTAGTAA
TCATTTATTCTTCTATATGGTGGTTTGCAAGAATATATTTAAGATGAATGGGACACTACCACACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23089.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis