Browse Element(s) Details


Os.778.2.S1_x_at

Description gb:NM_184093.1
DB_XREF= gi:34895279
GEN=P0698G03.13
TID=Os.778.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.778 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0698G03.13), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0270011/11TAK14, putative, expressed
LOC_Os01g024309/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02650NANA1+888897..895052retrotransposon protein, putative, unclassified
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified
LOC_Os01g02670Os.46785.2.S1_x_at4/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.6133.1.S1_at2/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.30226.2.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.442.1.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.778.2.S1_x_at--699--3231Chr01:918553..918577 (25 bp)
CAAGAGTTTTGTCCCAGTGAGCGCA
LOC_Os01g02700
Os.778.2.S1_x_at--232--8591Chr01:918478..918502 (25 bp)
TGGTGCCATATCAAGCAAGTCCGAT
LOC_Os01g02700
Os.778.2.S1_x_at--691--10512Chr01:918382..918406 (25 bp)
TTCAAGCCAGGCATACTATCCATCA
LOC_Os01g02700
Os.778.2.S1_x_at--998--10132Chr01:918366..918390 (25 bp)
TATCCATCACGAGTGTACCGTCAGC
LOC_Os01g02700
Os.778.2.S1_x_at--443--3832Chr01:918311..918335 (25 bp)
CTGCCGCCGACATGCATGAGTTGGA
LOC_Os01g02700
Os.778.2.S1_x_at--1100--6612Chr01:918292..918316 (25 bp)
GTTGGAGAAGAAGCTCTGCATCGTT
LOC_Os01g02700
Os.778.2.S1_x_at--1137--8872Chr01:918248..918272 (25 bp)
TGAGGTCTTGTGACCGACCGATGAT
LOC_Os01g02700
Os.778.2.S1_x_at--74--6612Chr01:918189..918213 (25 bp)
GATTGTTTGCAAATTCCTCCTAGGC
LOC_Os01g02700
Os.778.2.S1_x_at--455--10092Chr01:918169..918193 (25 bp)
TAGGCCATTCTTCTGTGACGATGAC
LOC_Os01g02700
Os.778.2.S1_x_at--935--7372Chr01:918155..918179 (25 bp)
GTGACGATGACTACATCCCGGCAAT
LOC_Os01g02700
Os.778.2.S1_x_at--712--5172Chr01:918135..918159 (25 bp)
GCAATGGAGTCGCTGTATCTGTCCT
LOC_Os01g02700
Target Sequence
CAAGAGTTTTGTCCCAGTGAGCGCAGCACGAGGAACAGTGGGATACATAGCTCCTGAGATGATCTCTCGGGGTTTTGGTG
CCATATCAAGCAAGTCCGATGTTTACAGCTTCGGGATGCTACTATTGGAGATGGCCGGAGGAAGAAGGAATGCTGATCCG
AATGCGGAGAATTCAAGCCAGGCATACTATCCATCACGAGTGTACCGTCAGCTGACCCGACAAGAAACAGGTGAGATCAC
CGCTGCCGCCGACATGCATGAGTTGGAGAAGAAGCTCTGCATCGTTGGATTGTGGTGCATCCAGATGAGGTCTTGTGACC
GACCGATGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGTGTTGATTGTTTGCAAATTCCTCCTAGGCCATTCTTCTGT
GACGATGACTACATCCCGGCAATGGAGTCGCTGTATCTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.778.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis