Browse Element(s) Details


OsAffx.1916.1.S1_s_at

Description tigr:9629.m00183
TID=OsAffx.1916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LRk-type protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0271011/11LRk-type protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02660NANA1+895668..898960retrotransposon protein, putative, unclassified
LOC_Os01g02670Os.46785.2.S1_x_at4/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.6133.1.S1_at2/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.30226.2.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.442.1.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1916.1.S1_s_at--54--3551Chr01:921294..921318 (25 bp)
CATCTATGCGGCCACAGCATGGGAT
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--622--2151Chr01:921307..921331 (25 bp)
ACAGCATGGGATGCCGAGAGCTTCT
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--940--2511Chr01:921334..921358 (25 bp)
AACTTCAAGAGTTGTCCACCAAATC
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--870--10711Chr01:921401..921425 (25 bp)
TTGCATCACAATCTCCGTCGTGCGG
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--1075--8231Chr01:921424..921448 (25 bp)
GGCACACCTCTCATGGAGTTATCAT
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--26--6791Chr01:921441..921465 (25 bp)
GTTATCATGTTCTGGACAGGACACC
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--464--8772Chr07:15351259..15351280 (22 bp)
TGTATCACCCAGTTCTAGGCTCCTG
NONE
OsAffx.1916.1.S1_s_at--1110--3691Chr01:921484..921508 (25 bp)
CTAGGCTCCTGCAAGGTGACTGCAA
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--185--3111Chr01:921507..921531 (25 bp)
AATATCTTACAAGCATGCTGCCATG
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--318--1451Chr01:921575..921599 (25 bp)
AGAAGCTCATCTCGACAAATTTATC
LOC_Os01g02710
OsAffx.1916.1.S1_s_at--174--6791Chr01:921780..921804 (25 bp)
GTTAGTAATGGCATCCAGGCACCCT
LOC_Os01g02710
Target Sequence 
CATCTATGCGGCCACAGCATGGGATGCCGAGAGCTTCTTCAACTTCAAGAGTTGTCCACCAAATCAGTGCAGCAAACATG
GACCAAAAGTCCGGTTCCCACTCCGCCTTGCATCACAATCTCCGTCGTGCGGCACACCTCTCATGGAGTTATCATGTTCT
GGACAGGACACCATCCTGTATCACCCAGTTCTAGGCTCCTGCAAGGTGACTGCAATATCTTACAAGCATGCTGCCATGTC
CATCATCCTGCTTGTAGATTCCACACCTCACTGCCCACTTCAGAAGCTCATCTCGACAAATTTATCAACTGATGTGTACA
AACCTCAAAAATTGGAAGCTGCAAGCTTACCAGACTGCAAAGTTGTTAGTAATGGCATCCAGGCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1916.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis