Browse Element(s) Details


Os.780.1.S1_a_at

Description gb:AK121811.1
DB_XREF= gi:37991434
TID=Os.780.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative eukaryoticrelease factor (P0698G03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098B11, full insert sequence.
FL= gb:AK121811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0272011/11Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g5087011/11Elongation factor Tu C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02670Os.46785.2.S1_x_at4/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.6133.1.S1_at2/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.30226.2.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02670OsAffx.442.1.S1_x_at1/111+901143..906944retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.780.1.S1_a_at--784--1032Chr04:29867117..29867141 (25 bp)
AGGTGGGATTCTTTGCAACCCTGGT
LOC_Os04g50870
Os.780.1.S1_a_at--352--1132Chr04:29867087..29867111 (25 bp)
AGTGCCTGTCTCTAACTTCTTGGAG
LOC_Os04g50870
Os.780.1.S1_a_at--842--1732Chr04:29867038..29867062 (25 bp)
ACCATTCCTATCCTTATTGGCTATC
LOC_Os04g50870
Os.780.1.S1_a_at--562--3052Chr04:29866892..29866916 (25 bp)
AATCGTGGCATTGCTTGACAAGGCT
LOC_Os04g50870
Os.780.1.S1_a_at--172--7332Chr04:29866727..29866748 (22 bp)
GTGCAGGTTACCTTAGACGCTCCGG
LOC_Os04g50870
Os.780.1.S1_a_at--629--5212Chr04:29866691..29866715 (25 bp)
GAATTCTCCAAATGCCGAGCTCTTG
LOC_Os04g50870
Os.780.1.S1_a_at--95--4092Chr04:29866676..29866700 (25 bp)
CGAGCTCTTGGCAGGGCATTCTTAA
LOC_Os04g50870
Os.780.1.S1_a_at--1022--3852Chr04:29866630..29866654 (25 bp)
CTGTTGGAGTCGTAACGCGGGTACT
LOC_Os04g50870
Os.780.1.S1_a_at--157--6452Chr04:29866598..29866622 (25 bp)
GATCAGAACTGAAAGACCTCCGCCC
LOC_Os04g50870
Os.780.1.S1_a_at--520--3112Chr04:29866563..29866587 (25 bp)
AATTTGAACGTATCTGCAGCCGTGC
LOC_Os04g50870
Os.780.1.S1_a_at--123--10872Chr04:29866480..29866504 (25 bp)
TTGGCGACGGCATTTTTCACTGTGT
LOC_Os04g50870
Target Sequence 
AGGTGGGATTCTTTGCAACCCTGGTTTCCCAGTGCCTGTCTCTAACTTCTTGGAGCTAAGGGTTCTAGTGTTGGACGTCA
CCATTCCTATCCTTATTGGCTATCAGGTCGAGTTTCACATACATCATGTGAAGGAGGCTGCGAGGGTTACGAAAATCGTG
GCATTGCTTGACAAGGCTGGCAAACCAAGCAAAACTGCACCTCGATTTCTTAAGTCAAAGCAGAATGCAGTTGTGCAGGT
TACCTTAGACGCTCCGGTCTGTGTTGAAGAATTCTCCAAATGCCGAGCTCTTGGCAGGGCATTCTTAAGGTCTNGTGGAA
GCACAATCGCTGTTGGAGTCGTAACGCGGGTACTCGGGCAAGATCAGAACTGAAAGACCTCCGCCCAACATCTGAAAATT
TGAACGTATCTGCAGCCGTGCCCTGCTTTGGGGTCCATAATATTGTAGTTGACTCAAAACGGTATTGCCGATGAGAAGAA
GTTTGGCGACGGCATTTTTCACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.780.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis