Browse Element(s) Details


Os.35772.3.S1_x_at

Description gb:NM_184105.1
DB_XREF= gi:34895303
GEN=P0698G03.28
TID=Os.35772.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35772 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (P0698G03.28), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0280011/11TAK14, putative, expressed
LOC_Os01g028309/11receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g027603/11receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35772.3.S1_x_at--1069--9112Chr01:992243..992267 (25 bp)
TGCTGATTTCGGTCTTGCGAAGCTA
LOC_Os01g02830
Os.35772.3.S1_x_at--794--7952Chr01:992210..992234 (25 bp)
GGATAAGAGCTTCGTCCCTGTGAGC
LOC_Os01g02830
Os.35772.3.S1_x_at--275--9892Chr01:992164..992188 (25 bp)
TACATAGCTCCCGAGATGATCTCTC
LOC_Os01g02830
Os.35772.3.S1_x_at--554--3772Chr01:992144..992168 (25 bp)
CTCTCGGAGCTTCGGTGTCATATCA
LOC_Os01g02830
Os.35772.3.S1_x_at--846--7072Chr01:992031..992055 (25 bp)
GTCAAGCTTATTATCCATCACGGGT
LOC_Os01g02830
Os.35772.3.S1_x_at--330--9873Chr01:992005..992029 (25 bp)
TACAGGGAGCTGACTCGGCGAGAAA
LOC_Os01g02830
Os.35772.3.S1_x_at--1085--4612Chr01:991977..992001 (25 bp)
GCGAGATCTCTGACATTGCTGATAT
LOC_Os01g02830
Os.35772.3.S1_x_at--72--2891Chr01:981454..981478 (25 bp)
AAGGTGGTACCGATGAACTGCAAGT
LOC_Os01g02800
Os.35772.3.S1_x_at--272--2551Chr01:981439..981463 (25 bp)
AACTGCAAGTTCCTCCAAGGCCATT
LOC_Os01g02800
Os.35772.3.S1_x_at--711--8033Chr01:991784..991808 (25 bp)
GGAGTCTTACAATATGCCATCTGAT
LOC_Os01g02830
Os.35772.3.S1_x_at--791--8833Chr01:991763..991787 (25 bp)
TGATCTAACTGCAATCTCCGAGGAG
LOC_Os01g02830
Target Sequence 
TGCTGATTTCGGTCTTGCGAAGCTATACCCAAGGGATAAGAGCTTCGTCCCTGTGAGCGCTGCACGAGGAACCGTGGGCT
ACATAGCTCCCGAGATGATCTCTCGGAGCTTCGGTGTCATATCAAGCAAATCCGATGTTTATAGCTTCGGAATGCTACTA
TTGGAGATGGCTGGAGGAAGAAGGAATGCAGATCCAAATGCAGCAAACTCAAGTCAAGCTTATTATCCATCACGGGTGTA
CAGGGAGCTGACTCGGCGAGAAACAAGCGAGATCTCTGACATTGCTGATATGCATGAACTAGAGAAGAAGCTTTGCATTG
TTGGATTGTGGTGCATTCAGATGAGGTCATGTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGTACC
GATGAACTGCAAGTTCCTCCAAGGCCATTCTTCTGTGATGATGAGCAATTGCCTGGAGTGGAGTCTTACAATATGCCATC
TGATCTAACTGCAATCTCCGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35772.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis