Browse Element(s) Details


Os.45510.1.S1_at

Description gb:CA755005
DB_XREF= gi:25799044
DB_XREF=BR030010000_PLATE_G02_15_018.ab1
CLONE=BR030010000_PLATE_G02_15_018.ab1
TID=Os.45510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698G03.33 (P0698G03.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g028608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02880Os.1981.1.S1_at11/111+1012867..1016297Fructose-bisphosphate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45510.1.S1_at--482--5011Chr01:999562..999586 (25 bp)
GCAGGCATGATATACCAGGGTTCTT
LOC_Os01g02860
Os.45510.1.S1_at--650--8891Chr01:999534..999558 (25 bp)
TGAGAGGAGTTATGCCACCCACGCG
LOC_Os01g02860
Os.45510.1.S1_at--20--1711Chr01:999451..999475 (25 bp)
ACCAATGGGATCTGCCAGCTTTTGA
LOC_Os01g02860
Os.45510.1.S1_at--1156--10751Chr01:999430..999454 (25 bp)
TTGATAGGCGAGTCTGCGGTTGTCC
LOC_Os01g02860
Os.45510.1.S1_at--231--4691Chr01:999415..999439 (25 bp)
GCGGTTGTCCTCCAGTGAATTATGC
LOC_Os01g02860
Os.45510.1.S1_at--221--10831Chr01:999374..999398 (25 bp)
TTGTCGACGCTGCATCCGGTTGGAA
LOC_Os01g02860
Os.45510.1.S1_at--678--8511Chr01:999354..999378 (25 bp)
TGGAAGTCCACCGATGAGCTCTCAA
LOC_Os01g02860
Os.45510.1.S1_at--170--7891Chr01:999269..999293 (25 bp)
GGTTACCAGTGCATGTCCCATGGGA
LOC_Os01g02860
Os.45510.1.S1_at--148--9011Chr01:999232..999256 (25 bp)
TGAATGATGGCCTCCTGATGGTGAT
NONE
Os.45510.1.S1_at--781--7311NONE
GTGCTCTTCTCATTCTGGGTACATA
NONE
Os.45510.1.S1_at--611--6551NONE
GATTACAGATTACAGCAGCTCCCGT
NONE
Target Sequence 
GCAGGCATGATATACCAGGGTTCTTCAGTGAGAGGAGTTATGCCACCCACGCGAGCACAGGCAGCTACNACCAGTGGCGC
CAGATATCAACACCTCTGGGTGGCAAGGTGTACCAATGGGATCTGCCAGCTTTTGATAGGCGAGTCTGCGGTTGTCCTCC
AGTGAATTATGCTGGGAGCAGCACACCATTGTCGACGCTGCATCCGGTTGGAAGTCCACCGATGAGCTCTCAATCGTTTG
GCTCCNATGATGGCAGCCTCACAAGCACGCCGGTTCAGCTCCNGGTGCCTCTCGGTTACCAGTGCATGTCCCATGGGATG
TGGTGAGGCGTGAATGATGGCCTCCTGATGGTGATGGGCAGTGTGATTTGGCGGTGCTCTTCTCATTCTGGGTACATACG
TAACAACACAAGCCGTACAGCATATACCGATTACAGATTACAGCAGCTCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis