Browse Element(s) Details


OsAffx.10881.2.S1_x_at

Description tigr:9629.m00156
TID=OsAffx.10881.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0244011/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g027901/11receptor kinase LRK14, putative, expressed
LOC_Os01g045201/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein
LOC_Os01g02480NANA1+797700..798456retrotransposon, putative, centromere-specific
LOC_Os01g02490OsAffx.23089.1.S1_x_at10/111+801325..802501hypothetical protein
LOC_Os01g02500Os.38171.2.S1_at11/111+804652..806523amidase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10881.2.S1_x_at--467--7351Chr01:788673..788697 (25 bp)
GTGCAATCAACGCATTCTACATTTC
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--915--9513Chr01:788688..788712 (25 bp)
TCTACATTTCGATATCAAGCCTCAG
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--933--4451Chr01:788706..788730 (25 bp)
GCCTCAGAACATTTTGCTAGATTAC
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--1127--6531Chr01:788752..788776 (25 bp)
GATTTTGGACTTGCGAAACTGTGTG
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--633--10811Chr01:788792..788816 (25 bp)
TTGTCACACTGACTGCAGCAAGAGG
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--416--1431Chr01:788838..788862 (25 bp)
AGAACTGTATTCTCGGAACTTTGGG
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--1156--471Chr01:788933..788957 (25 bp)
ATCTGGACCCAGGTATTGATAACCA
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--472--8151Chr01:789059..789083 (25 bp)
GGAAACTGGCAATTGTGGCACTATG
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--51--7051Chr01:789093..789117 (25 bp)
GTGGAACCCCAAAAACAGGCCATCA
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--997--871Chr01:789109..789133 (25 bp)
AGGCCATCAACGACCCAGGTGGTTA
LOC_Os01g02440
OsAffx.10881.2.S1_x_at--488--9051Chr01:789152..789176 (25 bp)
TGCAGGATCTGCAGATGCCTCCTAA
LOC_Os01g02440
Target Sequence 
GTGCAATCAACGCATTCTACATTTCGATATCAAGCCTCAGAACATTTTGCTAGATTACAGCTTCAATCCAAAGATTTCAG
ATTTTGGACTTGCGAAACTGTGTGCAAGGGATCAAAGCATTGTCACACTGACTGCAGCAAGAGGCACAATGGGCTACATT
GCACCAGAACTGTATTCTCGGAACTTTGGGGTGATATCTTACAAGTCAGATGTATACAGTTTCGGTATGTTGGTTTTAGA
AATGGTGAGTGGAAGAAGGAATCTGGACCCAGGTATTGATAACCAACATGAAGTTTATTTTCTAGAATGGATTTATGAGA
AAGTATTCACTGGGCAGAACTTATTGATTGGTACGGAAATGACACAGGATGAAAAATACAAAGTGAGGAAACTGGCAATT
GTGGCACTATGGTGCATTCAGTGGAACCCCAAAAACAGGCCATCAACGACCCAGGTGGTTAACATGCTAACAGGAAGGTT
GCAGGATCTGCAGATGCCTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10881.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis