Browse Element(s) Details


Os.1977.1.S1_a_at

Description gb:AK120121.1
DB_XREF= gi:37989744
TID=Os.1977.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (P0463F06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025P07, full insert sequence.
FL= gb:AK120121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0240011/11Ser/Thr receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1977.1.S1_a_at--356--8171Chr01:770061..770085 (25 bp)
GGAACACAGACCCAACCGTCGAGAG
LOC_Os01g02400
Os.1977.1.S1_a_at--658--5811Chr01:770069..770093 (25 bp)
GACCCAACCGTCGAGAGCCAAAATG
LOC_Os01g02400
Os.1977.1.S1_a_at--626--10332Chr01:865861..865885 (25 bp)
TTTAGATCATGAGACCGCATCGCCA
NONE
Os.1977.1.S1_a_at--731--4932Chr01:770399..770423 (25 bp)
GCTTGGCCAGCATTTCCTATAAAAT
LOC_Os01g02400
Os.1977.1.S1_a_at--713--10052Chr01:866003..866027 (25 bp)
TAGTTCTTAGTGAGCTGAAGCATGC
NONE
Os.1977.1.S1_a_at--1077--5893Chr01:876428..876452 (25 bp)
GAGCTGAAGCATGCACATATAGTGT
NONE
Os.1977.1.S1_a_at--776--10271Chr01:770519..770543 (25 bp)
TTAAACTAAACTGCGCAACCAGGTA
LOC_Os01g02400
Os.1977.1.S1_a_at--787--2351Chr01:770526..770550 (25 bp)
AAACTGCGCAACCAGGTATATGATA
LOC_Os01g02400
Os.1977.1.S1_a_at--125--1031Chr01:770539..770563 (25 bp)
AGGTATATGATATATCACCATGTAC
LOC_Os01g02400
Os.1977.1.S1_a_at--934--4331Chr01:770581..770605 (25 bp)
CCAGCAAACATATGCCAATGGATTT
LOC_Os01g02400
Os.1977.1.S1_a_at--696--4391Chr01:770594..770618 (25 bp)
GCCAATGGATTTTATTTGCAATATA
LOC_Os01g02400
Target Sequence 
GGAACACAGACCCAACCGTCGAGAGCCAAAATGAGTTCTACTTTCCTGAGTGGATATATGAGAGAGTTATCAATGGGCAG
GACCTGGTNCTTACCNANTGGAGACNAACACNNAAGGAGNAGAAAGAAATGGTGAGACANGCTAGCNATTGTAGCCCTAT
GGTGCATTCAGTGGAACCCNAAAGACCGGCCCTCANATGACNAANGGTGGTAAACATGTTGACGGGGAGGTTGCAGAATC
TNGCAGGTGCCCCCTAAGCCCTTTATATCGTCTCNAAAATCAACTTGTGATTTAGATCATGAGACCGCATCGCCANTGGT
TTGGACTTTGGAGACCAGCNAAGCAATGGAGCTTGGCCAGCATTTCCTATAAAATGGCATCACCATGGTNTTTGTNGCCT
GAGTGACAGATANATCCACATATCATAAAATAGTTCTTAGTGAGCTGAAGCATGCACATATAGTGTTTAATTANTTAAAC
TAAACTGCGCAACCAGGTATATGATATATCACCATGTACNTCATGTAATTNTGNTATCCAGCAAACATATGCCAATGGAT
TTTATTTGCAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1977.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis