Browse Element(s) Details


Os.1849.1.S1_at

Description gb:AK068451.1
DB_XREF= gi:32978469
TID=Os.1849.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) receptor-like kinase (OJ1212_B09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152M16, full insert sequence.
FL= gb:AK068451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0239011/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02410Os.48023.1.A1_at8/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.33796.1.S1_x_at5/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.26617.2.S1_x_at4/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.7310.1.S1_at3/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410Os.45516.2.S1_x_at2/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02410OsAffx.12928.1.S1_at1/111+771211..776039Protein kinase domain containing protein, expressed
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1849.1.S1_at--74--5311Chr01:764509..764533 (25 bp)
GAAGGAACTCAGACATGCATGCAGG
LOC_Os01g02390
Os.1849.1.S1_at--165--3531Chr01:764496..764520 (25 bp)
CATGCATGCAGGGAACTCAAGTCAG
LOC_Os01g02390
Os.1849.1.S1_at--400--6191Chr01:764486..764510 (25 bp)
GGGAACTCAAGTCAGGCCTACTACC
LOC_Os01g02390
Os.1849.1.S1_at--634--8432Chr01:859134..859158 (25 bp)
GGCCTACTACCCGTCGTGGGTGTAT
NONE
Os.1849.1.S1_at--1113--7192Chr01:764460..764484 (25 bp)
GTCGTGGGTGTATGACCGGCTAATA
LOC_Os01g02390
Os.1849.1.S1_at--175--7112Chr01:858888..858912 (25 bp)
GTCACCTATGATGGATTCTTACCAA
NONE
Os.1849.1.S1_at--348--7932Chr01:858876..858900 (25 bp)
GGATTCTTACCAATTCTCCTCTGGG
NONE
Os.1849.1.S1_at--875--3172Chr01:858866..858890 (25 bp)
CAATTCTCCTCTGGGCTAACTGAAA
NONE
Os.1849.1.S1_at--834--8971Chr01:764162..764186 (25 bp)
TGAACTTATGCATGTTTTGATGCCA
LOC_Os01g02390
Os.1849.1.S1_at--445--10012Chr01:764119..764143 (25 bp)
TAGCTCTTGTAGGTAGGTGGTAAAA
LOC_Os01g02390
Os.1849.1.S1_at--1068--9091Chr01:764094..764118 (25 bp)
TGCTGAAGCTGGAAATATTAACTGT
LOC_Os01g02390
Target Sequence 
GAAGGAACTCAGACATGCATGCAGGGAACTCAAGTCAGGCCTACTACCCGTCGTGGGTGTATGACCGGCTAATAGANCAA
CAGGTGGGTGTTGGTGAGATATCTGCTGCTACTGTTGCTAACATGCATGAGCTTGAGAGGAAGCTGTGCATAATCGGGCT
ACATTGCATCCAGATGAAGTCTCACGATCGGCCGACGATGAGCGAGGTCATAGAGATGCTTGAAGGTGGCGTTGTTGGCC
TGCAGATGCCTCCAAGACCATTCTTCTGTGATGATGANTCCATGTCACCTATGATGGATTCTTACCAATTCTCCTCTGGG
CTAACTGAAATCTTAGAGGAGGATGAGTGAACTTATGCATGTTTTGATGCCAAATCAGCTAGCTNGTAGNTAGCTCTTGT
AGGTAGGTGGTAAAATGCTGAAGCTGGAAATATTAACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis