Browse Element(s) Details

Os.45539.1.S1_at

Description

gb:AK111700.1
DB_XREF= gi:37988363
TID=Os.45539.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (OJ1212_B09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023005G06, full insert sequence.
FL= gb:AK111700.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g02360	11/11	LRK33, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g02290	Os.1978.1.S1_at	11/11	1	+	717432..720088	Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290	OsAffx.23090.4.S1_x_at	1/11	1	+	717432..720088	Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290	OsAffx.23090.9.S1_x_at	1/11	1	+	717432..720088	Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300	Os.27046.2.S1_x_at	11/11	1	+	720509..723123	receptor kinase ORK10, putative, expressed
LOC_Os01g02300	Os.27046.1.S1_at	10/11	1	+	720509..723123	receptor kinase ORK10, putative, expressed
LOC_Os01g02310	OsAffx.10878.1.S1_at	11/11	1	+	725779..727732	Thaumatin family protein, expressed
LOC_Os01g02310	OsAffx.10878.2.S1_x_at	11/11	1	+	725779..727732	Thaumatin family protein, expressed
LOC_Os01g02320	Os.34013.2.S1_x_at	11/11	1	+	727952..734822	TAK14, putative, expressed
LOC_Os01g02320	Os.34013.1.S1_at	10/11	1	+	727952..734822	TAK14, putative, expressed
LOC_Os01g02320	OsAffx.22827.1.S1_x_at	1/11	1	+	727952..734822	TAK14, putative, expressed
LOC_Os01g02340	Os.37621.3.S1_at	11/11	1	+	735730..738023	Thaumatin family protein, expressed
LOC_Os01g02340	OsAffx.10878.2.S1_x_at	1/11	1	+	735730..738023	Thaumatin family protein, expressed
LOC_Os01g02350	OsAffx.22827.1.S1_x_at	11/11	1	+	739483..741958	receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350	Os.40177.1.S1_at	11/11	1	+	739483..741958	receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350	Os.34013.2.S1_x_at	2/11	1	+	739483..741958	receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360	Os.45539.1.S1_at	11/11	1	+	742254..745747	LRK33, putative, expressed
LOC_Os01g02360	OsAffx.23090.1.S1_x_at	4/11	1	+	742254..745747	LRK33, putative, expressed
LOC_Os01g02360	OsAffx.23090.4.S1_x_at	3/11	1	+	742254..745747	LRK33, putative, expressed
LOC_Os01g02360	OsAffx.23090.2.S1_x_at	1/11	1	+	742254..745747	LRK33, putative, expressed
LOC_Os01g02370	Os.52696.1.S1_at	10/11	1	+	748882..751794	receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380	NA	NA	1	+	753696..758852	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390	Os.1849.1.S1_at	11/11	1	+	763983..766475	TAK14, putative, expressed
LOC_Os01g02390	OsAffx.10882.2.S1_x_at	3/11	1	+	763983..766475	TAK14, putative, expressed
LOC_Os01g02400	Os.1977.1.S1_a_at	11/11	1	+	767134..770651	Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400	Os.1977.3.S1_x_at	9/11	1	+	767134..770651	Ser/Thr receptor-like kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009621	biological_process	response to pathogenic fungi
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.45539.1.S1_at--244--805	1	Chr01:745377..745401 (25 bp)	GGAGAGCACAACACCATGACTGAAT	LOC_Os01g02360
Os.45539.1.S1_at--18--765	1	Chr01:745410..745434 (25 bp)	GGGAGTTAATCCACATGTTTTCATA	LOC_Os01g02360
Os.45539.1.S1_at--771--295	1	Chr01:745439..745463 (25 bp)	AAGGCCTAGAAATTGCGTTGTGTTT	LOC_Os01g02360
Os.45539.1.S1_at--548--743	1	Chr01:745458..745482 (25 bp)	GTGTTTATTTTGATGATTCCGCTGG	LOC_Os01g02360
Os.45539.1.S1_at--679--657	1	Chr01:745472..745496 (25 bp)	GATTCCGCTGGATTAGCCATCTGAG	LOC_Os01g02360
Os.45539.1.S1_at--1072--765	1	Chr01:745497..745521 (25 bp)	GGGATCACTCTTCAACATGTATTGC	LOC_Os01g02360
Os.45539.1.S1_at--392--125	1	Chr01:745551..745575 (25 bp)	AGTTGTGGCTGTTACCTCTGTTCAT	LOC_Os01g02360
Os.45539.1.S1_at--952--175	1	Chr01:745564..745588 (25 bp)	ACCTCTGTTCATCAGTTGCTGTGAT	LOC_Os01g02360
Os.45539.1.S1_at--59--669	1	Chr01:745578..745602 (25 bp)	GTTGCTGTGATGTATCTCCTGATGT	LOC_Os01g02360
Os.45539.1.S1_at--590--887	1	Chr01:745597..745621 (25 bp)	TGATGTATTGTACTCCTAGCTCCAC	LOC_Os01g02360
Os.45539.1.S1_at--1150--1	1	Chr01:745641..745665 (25 bp)	ATTGTCCTTTTCATGGGTCAGTACC	LOC_Os01g02360

Target Sequence

GGAGAGCACAACACCATGACTGAATAAATTTTTGGGAGTTAATCCACATGTTTTCATATAGTAAGGCCTAGAAATTGCGT
TGTGTTTATTTTGATGATTCCGCTGGATTAGCCATCTGAGGGGATCACTCTTCAACATGTATTGCAGTTAAGTAGAAATA
CAACATTGTGGTTCAGTTGTGGCTGTTACCTCTGTTCATCAGTTGCTGTGATGTATCTCCTGATGTATTGTACTCCTAGC
TCCACTAGTTAGTCAGATACTCTTATTGTCCTTTTCATGGGTCAGTACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis