Browse Element(s) Details


Os.34013.1.S1_at

Description gb:AK059374.1
DB_XREF= gi:32969392
TID=Os.34013.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OJ1212_B09.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F05, full insert sequence.
FL= gb:AK059374.1 gb:AK073168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0232010/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34013.1.S1_at--596--6231Chr01:728270..728294 (25 bp)
GATGGCTGAAGCTTATGCATGTGCT
LOC_Os01g02320
Os.34013.1.S1_at--903--6931Chr01:728232..728256 (25 bp)
GTCAAGGTACTAAGTTGGTTGTTGT
LOC_Os01g02320
Os.34013.1.S1_at--1100--6631Chr01:728215..728239 (25 bp)
GTTGTTGTTTTTTCTCAGATAAGGT
LOC_Os01g02320
Os.34013.1.S1_at--106--2551Chr01:728174..728198 (25 bp)
AACTGAGGCTACATATTGTTGTAAA
LOC_Os01g02320
Os.34013.1.S1_at--751--3431Chr01:728149..728173 (25 bp)
CAGATGTTTCATCGCATTGTTGTAA
LOC_Os01g02320
Os.34013.1.S1_at--412--6431Chr01:728066..728090 (25 bp)
GATCTTGTGGTACGCTATTCATTTG
LOC_Os01g02320
Os.34013.1.S1_at--621--6991Chr01:728057..728081 (25 bp)
GTACGCTATTCATTTGCATACGATA
LOC_Os01g02320
Os.34013.1.S1_at--406--1731Chr01:728038..728062 (25 bp)
ACGATAAAAGTTGTATTTGTGCCAT
LOC_Os01g02320
Os.34013.1.S1_at--827--10251Chr01:728023..728047 (25 bp)
TTTGTGCCATGAGAAAGTACTACTG
LOC_Os01g02320
Os.34013.1.S1_at--116--7291Chr01:727984..728008 (25 bp)
GTGCCATGAGAGCTATGACCATTTT
LOC_Os01g02320
Os.34013.1.S1_at--961--2731Chr01:727952..727976 (25 bp)
AAGAAGAGCTATTGGTTTCACATGT
NONE
Target Sequence 
GATGGCTGAAGCTTATGCATGTGCTTTGATGCCAAAAAGTCAAGGTACTAAGTTGGTTGTTGTTTTTTCTCAGATAAGGT
GGTAGGTAGGTTGTAAAACTGAGGCTACATATTGTTGTAAACAGATGTTTCATCGCATTGTTGTAATTTGAAAGTGATTT
TTTTTAGGGAATAACAGAGTATAAAGCTGGNACGAGNAAAATGTGATCTTGTGGTACGCTATTCATTTGCATACGATAAA
AGTTGTATTTGTGCCATGAGAAAGTACTACTGAATTATGGTTGAAAGTGCCATGAGAGCTATGACCATTTTGATATGTAA
GAAGAGCTATTGGTTTCACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis