Browse Element(s) Details


Os.27046.2.S1_x_at

Description gb:NM_183555.1
DB_XREF= gi:34894237
GEN=OSJNBb0032H19.23
TID=Os.27046.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27046 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like kinase (OSJNBb0032H19.23), mRNA.
PROD=putative receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0230011/11receptor kinase ORK10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27046.2.S1_x_at--43--571Chr01:722139..722163 (25 bp)
ATCCTTCTGGATAGCAACTTCACTC
LOC_Os01g02300
Os.27046.2.S1_x_at--163--2331Chr01:722166..722190 (25 bp)
AAAGTCGCCGACTTTGGGCTGGCCA
LOC_Os01g02300
Os.27046.2.S1_x_at--336--8351Chr01:722182..722206 (25 bp)
GGCTGGCCAAGCTATACCCAAGGGA
LOC_Os01g02300
Os.27046.2.S1_x_at--494--5451Chr01:722239..722263 (25 bp)
GAACGATAGGGTACATCGCTCCTGA
LOC_Os01g02300
Os.27046.2.S1_x_at--647--6511Chr01:722267..722291 (25 bp)
GATATCTCGAAGCTTTGGCACCATT
LOC_Os01g02300
Os.27046.2.S1_x_at--779--8251Chr01:722283..722307 (25 bp)
GGCACCATTTCATGCAAGGCTGATG
LOC_Os01g02300
Os.27046.2.S1_x_at--83--8971Chr01:722512..722536 (25 bp)
TGAAACCAGCTGAACGGCCTTCGAT
LOC_Os01g02300
Os.27046.2.S1_x_at--119--6351Chr01:722552..722576 (25 bp)
GATGCTCGAATCTGATGATCCTGAT
LOC_Os01g02300
Os.27046.2.S1_x_at--737--8831Chr01:722573..722597 (25 bp)
TGATAACCTGCAGGTACCTCCGAGA
LOC_Os01g02300
Os.27046.2.S1_x_at--608--3791Chr01:722590..722614 (25 bp)
CTCCGAGACCTTTCTTTGGTGTGGA
LOC_Os01g02300
Os.27046.2.S1_x_at--1122--7471Chr01:722608..722632 (25 bp)
GTGTGGATGATCACATCTCTGAGAT
LOC_Os01g02300
Target Sequence 
ATCCTTCTGGATAGCAACTTCACTCCAAAAGTCGCCGACTTTGGGCTGGCCAAGCTATACCCAAGGGACGACAGCTTGGT
GCCGGTGAGTGCTGCACGGGGAACGATAGGGTACATCGCTCCTGAGATGATATCTCGAAGCTTTGGCACCATTTCATGCA
AGGCTGATGTTTACAGCTTTGGGATGTTATTGCTGGACATTGCTGGTGGTAGGAGGAACAGGGAGCAGCATACATCCAAC
TCAGCCCATCTTTATTACCCAGCTTTGGTGTATGATTGCCTAACTCAACAAGAAGTGAGCGAGATTTCAGAGGATATTGG
TATCCACTGGGTAGAAAGGAAGTTGTGCATTGTTGGGTTCTGGTGCATTCAGATGAAACCAGCTGAACGGCCTTCGATGA
GCGAGGTTGTGGAGATGCTCGAATCTGATGATCCTGATAACCTGCAGGTACCTCCGAGACCTTTCTTTGGTGTGGATGAT
CACATCTCTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27046.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis