Browse Element(s) Details


Os.1978.1.S1_at

Description gb:AF044260.1
DB_XREF= gi:2854048
TID=Os.1978.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1978 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone OsRLK8 receptor serinethreonine kinase mRNA, complete cds.
PROD=receptor serinethreonine kinase
FL= gb:AF044260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0229011/11Ser/Thr receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02260NANA1+691518..692915retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1978.1.S1_at--393--10571Chr01:717974..717998 (25 bp)
TTCTAGGAACTTTGGCGCGGTATCT
LOC_Os01g02290
Os.1978.1.S1_at--663--10191Chr01:717964..717988 (25 bp)
TTTGGCGCGGTATCTTACAAGTCAG
LOC_Os01g02290
Os.1978.1.S1_at--35--8791Chr01:717938..717962 (25 bp)
TGTTTTCAGTTTTGGCATGCTAGTG
LOC_Os01g02290
Os.1978.1.S1_at--735--6191Chr01:717893..717917 (25 bp)
GAGGAACTCAGATCCAAGTATCAAC
LOC_Os01g02290
Os.1978.1.S1_at--206--2291Chr01:717863..717887 (25 bp)
AAATGAGGTTTTTGTTCCAGAGTGG
LOC_Os01g02290
Os.1978.1.S1_at--1062--10051Chr01:717825..717849 (25 bp)
TAGTCAGTGCGCAAGAGTCAGAATT
LOC_Os01g02290
Os.1978.1.S1_at--1039--31Chr01:717751..717775 (25 bp)
ATTGTGGCGCTATGGTGTGTTCAGT
LOC_Os01g02290
Os.1978.1.S1_at--209--8791Chr01:717734..717758 (25 bp)
TGTTCAGTGGAACCCAGCAAACCGG
LOC_Os01g02290
Os.1978.1.S1_at--605--91Chr01:717641..717665 (25 bp)
ATTCGTCTCATCTCTAAGCTAACCT
LOC_Os01g02290
Os.1978.1.S1_at--327--5931Chr01:717566..717590 (25 bp)
GAGCATGTCATGATGTCCAGTCAGT
LOC_Os01g02290
Os.1978.1.S1_at--1120--2031Chr01:717499..717523 (25 bp)
ACTTCTATTTCCTAATCGATTTGTG
LOC_Os01g02290
Target Sequence 
TTCTAGGAACTTTGGCGCGGTATCTTACAAGTCAGATGTTTTCAGTTTTGGCATGCTAGTGTTGGAAATGTTGAGCGGAA
AGAGGAACTCAGATCCAAGTATCAACAGCCAAAATGAGGTTTTTGTTCCAGAGTGGATATATGAGACAATAGTCAGTGCG
CAAGAGTCAGAATTTGCCAAGGATATGACACAGGAAGAGAAAGAAAAGTTGAGAAAGCTGGCCATTGTGGCGCTATGGTG
TGTTCAGTGGAACCCAGCAAACCGGCCCTCCATGAGAAAAGTGGTGAATATGTTAACAGGAAGCTTGCAAAATCTGAAGA
ATCCCCCTAGGCCATTCGTCTCATCTCTAAGCTAACCTACACCAGAAAATCTGGCGAGCTAAATGTATCAGCATGTTACA
TACAAGTTGAGCATGTCATGATGTCCAGTCAGTTCTGAAAATTGCACTCTGAATGTAATATGTAGCTAGAACAATACTTC
TATTTCCTAATCGATTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis