Browse Element(s) Details


OsAffx.10878.2.S1_x_at

Description tigr:9629.m00142
TID=OsAffx.10878.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thaumatin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0231011/11Thaumatin family protein, expressed
LOC_Os01g023401/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10878.2.S1_x_at--586--2311Chr01:727111..727135 (25 bp)
AAAGGTCTCTCATACCTTCATGAGG
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--1012--5951Chr01:727146..727170 (25 bp)
GAGAATTGCTCACTTGGATGTAAAA
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--499--3771Chr01:727212..727236 (25 bp)
CTCTGATTTTGGACTATGCAAGCTC
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--715--8231Chr01:727276..727300 (25 bp)
GGCACACCTGGATATTTAGCTCCTG
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--591--10451Chr01:727291..727315 (25 bp)
TTAGCTCCTGAATGGCTGACATCGC
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--365--8492Chr01:737275..737299 (25 bp)
TGGCTGACATCGCAGATCACAGAAA
LOC_Os01g02340
OsAffx.10878.2.S1_x_at--92--2731Chr01:727381..727405 (25 bp)
AAGAATGTTGACACTTCCCGGTCTG
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--300--7811Chr01:727400..727424 (25 bp)
GGTCTGAACAGAGCATCCATCTAAT
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--1056--8171Chr01:727599..727623 (25 bp)
GGAAGGCACCATAAGTATCGAAACT
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--814--3571Chr01:727626..727650 (25 bp)
CATAGTTCATGATTTTGTCGCAGTA
LOC_Os01g02310
OsAffx.10878.2.S1_x_at--700--1171Chr01:727647..727693 (25 bp)
AGTAAATCCATTGTGGGCTCAGCTC
LOC_Os01g02310
Target Sequence 
AAAGGTCTCTCATACCTTCATGAGGAGTGCACAAAGAGAATTGCTCACTTGGATGTAAAACCACAAAATATCCTCCTGGA
TGACAAATTCAATGCTAAACTCTCTGATTTTGGACTATGCAAGCTCATTGATCGAGATAAGAGCCAAGTGATTACAAGAA
TGAGAGGCACACCTGGATATTTAGCTCCTGAATGGCTGACATCGCAGATCACAGAAAAGGCAGATGTCTATAGCTTTGGC
ATAGTAGTCATGGAAATCATCAGCGGAAGAAAGAATGTTGACACTTCCCGGTCTGAACAGAGCATCCATCTAATTACCTT
ATTGCAAGAAAAGGTGAAGAGTGATCAGTTGGTAGATTTGATTGACAAAGATAATAATGACATGCAAGTACACGAGCAAG
AAGTAATAGAGATGATGAAATTTGCAATGTGGTGTTTGCAGATCGATTGCAAAAGGAGGCCTCAAATGTCTGAGGTTGTA
AAAGCATTGGAAGGCACCATAAGTATCGAAACTAACATAGTTCATGATTTTGTCGCAGTAAATCCATTGTGGGCTCAGCT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10878.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis